RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 LIMA1Q9UHB6 759 aaKnown RBP16.76■□□□□ 0.27
VPS29-207ENST00000549970 PCOLCE2Q9UKZ9 415 aa16.76■□□□□ 0.27
VPS29-207ENST00000549970 SARDHQ9UL12 918 aa16.76■□□□□ 0.27
VPS29-207ENST00000549970 A0A0D9SEW6 157 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 DRGXA6NNA5 263 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 LGALS16A8MUM7 142 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 MBD3O95983 291 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 MT-CO1P00395 513 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 SRCP12931 536 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 MMP8P22894 467 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 C21orf59P57076 290 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 RACK1P63244 317 aaKnown RBP16.75■□□□□ 0.27
VPS29-207ENST00000549970 UBXN1Q04323 297 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 C15orf59Q2T9L4 293 aaPredicted RBP16.75■□□□□ 0.27
VPS29-207ENST00000549970 RAB6CQ53S08 254 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 CCDC183Q5T5S1 534 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 FAM46CQ5VWP2 391 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 ARCQ7LC44 396 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 BNIPLQ7Z465 357 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 SETD3Q86TU7 594 aaPredicted RBP16.75■□□□□ 0.27
VPS29-207ENST00000549970 CHCHD4Q8N4Q1 142 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 ATP11CQ8NB49 1132 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 HAPLN3Q96S86 360 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 C2orf49Q9BVC5 232 aaPredicted RBP16.75■□□□□ 0.27
VPS29-207ENST00000549970 ACE2Q9BYF1 805 aaPredicted RBP16.75■□□□□ 0.27
VPS29-207ENST00000549970 RAB6CQ9H0N0 254 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 AASDHPPTQ9NRN7 309 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 TMEM51Q9NW97 253 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 VPS51Q9UID3 782 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 KLK13Q9UKR3 277 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 DAAM1Q9Y4D1 1078 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 TP53BP1Q12888 1972 aaPredicted RBP16.75■□□□□ 0.27
VPS29-207ENST00000549970 DOCK4Q8N1I0 1966 aa16.75■□□□□ 0.27
VPS29-207ENST00000549970 KMT2BQ9UMN6 2715 aaPredicted RBP16.74■□□□□ 0.27
VPS29-207ENST00000549970 IGLV3-10A0A075B6K4 115 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 TBC1D3DA0A087WVF3 549 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 TBC1D3IA0A087WXS9 549 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 TBC1D3EA0A087X179 549 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 TBC1D3KA0A087X1G2 549 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 TBC1D3FA6NER0 549 aaPredicted RBP16.74■□□□□ 0.27
VPS29-207ENST00000549970 TBC1D3LB9A6J9 549 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 C1QTNF3-AMACRE9PGA6 284 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 K7ERQ8 282 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 CBFA2T3O75081 653 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 RTN2O75298 545 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 TRIM16O95361 564 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 GJB6O95452 261 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 TBC1D3HP0C7X1 549 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 FTH1P19P0C7X4 201 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 OR1E1P30953 314 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 CTSKP43235 329 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 CCR5P51681 352 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 PPP2CBP62714 309 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 PPP2CAP67775 309 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 ZNF423Q2M1K9 1284 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 C6orf118Q5T5N4 469 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 ACBD5Q5T8D3 534 aaPredicted RBP16.74■□□□□ 0.27
VPS29-207ENST00000549970 TBC1D3GQ6DHY5 549 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 TBC1D3CQ6IPX1 549 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 LINGO4Q6UY18 593 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 TRIM72Q6ZMU5 477 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 TBC1D3Q8IZP1 549 aaPredicted RBP16.74■□□□□ 0.27
VPS29-207ENST00000549970 PNPLA1Q8N8W4 532 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 DCAF4L2Q8NA75 395 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 OR7D4Q8NG98 312 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 JOSD2Q8TAC2 188 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 PIP4K2CQ8TBX8 421 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 RXFP2Q8WXD0 754 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 PCDHB18PQ96TA0 734 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 SEPT11Q9NVA2 429 aaKnown RBP16.74■□□□□ 0.27
VPS29-207ENST00000549970 PPM1HQ9ULR3 514 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 HS3ST2Q9Y278 367 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 PCDHGB2Q9Y5G2 931 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 USP24Q9UPU5 2620 aa16.74■□□□□ 0.27
VPS29-207ENST00000549970 H0Y8X5 98 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 MCF2LO15068 1137 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 ALOX15BO15296 676 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 FLRT2O43155 660 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 PROS1P07225 676 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 UNGP13051 313 aaPredicted RBP16.73■□□□□ 0.27
VPS29-207ENST00000549970 GLDCP23378 1020 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 RRM1P23921 792 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 SDC4P31431 198 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 NSFP46459 744 aaKnown RBP16.73■□□□□ 0.27
VPS29-207ENST00000549970 CCT8P50990 548 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 IL9RQ01113 521 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 CNTN1Q12860 1018 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 NCAPHQ15003 741 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 SUZ12Q15022 739 aaKnown RBP16.73■□□□□ 0.27
VPS29-207ENST00000549970 CCDC14Q49A88 953 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 ARTNQ5T4W7 220 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 AOPEPQ8N6M6 819 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 RHBDD1Q8TEB9 315 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 SERAC1Q96JX3 654 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 SPON2Q9BUD6 331 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 TMEM121BQ9BXQ6 578 aaPredicted RBP16.73■□□□□ 0.27
VPS29-207ENST00000549970 ZYG11BQ9C0D3 744 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 ADAM22Q9P0K1 906 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 BTBD3Q9Y2F9 522 aa16.73■□□□□ 0.27
VPS29-207ENST00000549970 NEUROG3Q9Y4Z2 214 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms