RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 ME1P48163 572 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 TAS2R38P59533 333 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 SRSF1Q07955 248 aaKnown RBP eCLIP13.13□□□□□ -0.31
SCAF11-208ENST00000546534 CUL2Q13617 745 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 FOXD4L6Q3SYB3 417 aaPredicted RBP13.13□□□□□ -0.31
SCAF11-208ENST00000546534 FOXD4L5Q5VV16 416 aaPredicted RBP13.13□□□□□ -0.31
SCAF11-208ENST00000546534 FAM46CQ5VWP2 391 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 LCLAT1Q6UWP7 414 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 FOXD4L3Q6VB84 417 aaPredicted RBP13.13□□□□□ -0.31
SCAF11-208ENST00000546534 DSG4Q86SJ6 1040 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 LURAP1LQ8IV03 231 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 MAPK15Q8TD08 544 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 DQX1Q8TE96 717 aaKnown RBP13.13□□□□□ -0.31
SCAF11-208ENST00000546534 SLC35F5Q8WV83 523 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 FOXD4L4Q8WXT5 416 aaPredicted RBP13.13□□□□□ -0.31
SCAF11-208ENST00000546534 OR8D1Q8WZ84 308 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 TFAP2BQ92481 460 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 KLK6Q92876 244 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 SLC39A13Q96H72 371 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 TRIM4Q9C037 500 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 NLGN3Q9NZ94 848 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 IL17BQ9UHF5 180 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 PPM1HQ9ULR3 514 aa13.13□□□□□ -0.31
SCAF11-208ENST00000546534 K7ESM1 405 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 SMAPO00193 183 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 RNGTTO60942 597 aaKnown RBP13.12□□□□□ -0.31
SCAF11-208ENST00000546534 ALPPL2P10696 532 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 PDGFRAP16234 1089 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 TACR2P21452 398 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 TGM2P21980 687 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 RPL13P26373 211 aaKnown RBP13.12□□□□□ -0.31
SCAF11-208ENST00000546534 DUSP3P51452 185 aaPredicted RBP13.12□□□□□ -0.31
SCAF11-208ENST00000546534 NFATC3Q12968 1075 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 RAP1GAP2Q684P5 730 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 CCDC81Q6ZN84 652 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 LAPTM4BQ86VI4 370 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 EXD3Q8N9H8 876 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 IFI44Q8TCB0 444 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 ATXN7L3BQ96GX2 97 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 PRR11Q96HE9 360 aaPredicted RBP13.12□□□□□ -0.31
SCAF11-208ENST00000546534 SERPINB11Q96P15 392 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 NOX5Q96PH1 765 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 CALN1Q9BXU9 219 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 USP29Q9HBJ7 922 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 PREBQ9HCU5 417 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 FZD3Q9NPG1 666 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 TJP2Q9UDY2 1190 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 PIEZO2Q9H5I5 2752 aa13.12□□□□□ -0.31
SCAF11-208ENST00000546534 NYNRINQ9P2P1 1898 aaKnown RBP13.12□□□□□ -0.31
SCAF11-208ENST00000546534 PMS2P1A4D2B8 440 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 NEMP2A6NFY4 417 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 SCAMP1O15126 338 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 NEBLO76041 1014 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 CENPBP07199 599 aaPredicted RBP13.11□□□□□ -0.31
SCAF11-208ENST00000546534 AKT2P31751 481 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 PLK1P53350 603 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 CLDN2P57739 230 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 SULT2A1Q06520 285 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 NNTQ13423 1086 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 SLC12A1Q13621 1099 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 ZNF284Q2VY69 593 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 ACCSLQ4AC99 568 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 CBWD6Q4V339 395 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 ZCWPW2Q504Y3 356 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 ZNF542PQ5EBM4 170 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 CBWD3Q5JTY5 395 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 CBWD5Q5RIA9 395 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 CHSY1Q86X52 802 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 CIR1Q86X95 450 aaPredicted RBP13.11□□□□□ -0.31
SCAF11-208ENST00000546534 SLC22A18ASQ8N1D0 253 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 UBR7Q8N806 425 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 CCDC97Q96F63 343 aaPredicted RBP13.11□□□□□ -0.31
SCAF11-208ENST00000546534 ZSWIM1Q9BR11 485 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 FAM117AQ9C073 453 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 MIS12Q9H081 205 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 KIAA1257Q9ULG3 409 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 NAALADL1Q9UQQ1 740 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 ENTPD2Q9Y5L3 495 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 HEMK1Q9Y5R4 338 aaPredicted RBP13.11□□□□□ -0.31
SCAF11-208ENST00000546534 DOCK9Q9BZ29 2069 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 PTPN13Q12923 2485 aa13.11□□□□□ -0.31
SCAF11-208ENST00000546534 A0A1W2PQU0 124 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 CPED1A4D0V7 1026 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 RCCD1A6NED2 376 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 CDRT15L2A8MXV6 281 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 C1QTNF3-AMACRE9PGA6 284 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 MCF2LO15068 1137 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 ATP9BO43861 1147 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 STX10O60499 249 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 FBXO21O94952 628 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 RHOBTB3O94955 611 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 ZNF18P17022 549 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 YWHAEP62258 255 aaKnown RBP13.1□□□□□ -0.31
SCAF11-208ENST00000546534 NUCB2P80303 420 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 CLN3Q13286 438 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 DLG2Q15700 870 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 CNGA2Q16280 664 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 CDKN3Q16667 212 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 ZSCAN23Q3MJ62 389 aa13.1□□□□□ -0.31
SCAF11-208ENST00000546534 ARL13BQ3SXY8 428 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms