RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 FRYQ5TBA9 3013 aa8.71□□□□□ -1.01
USP28-215ENST00000545608 TBC1D3DA0A087WVF3 549 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 TBC1D3IA0A087WXS9 549 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 TBC1D3EA0A087X179 549 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 TBC1D3KA0A087X1G2 549 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 A0A1B0GVM2 712 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 FAM149AA5PLN7 773 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 TBC1D3FA6NER0 549 aaPredicted RBP8.71□□□□□ -1.02
USP28-215ENST00000545608 TRABD2BA6NFA1 517 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 TCAF2A6NFQ2 919 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 TBC1D3LB9A6J9 549 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 CBX4O00257 560 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 FOXN3O00409 490 aaPredicted RBP8.71□□□□□ -1.02
USP28-215ENST00000545608 DFNA5O60443 496 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 IL1BP01584 269 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 ERBB2P04626 1255 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 TBC1D3HP0C7X1 549 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 PNMA6AP0CW24 399 aaPredicted RBP8.71□□□□□ -1.02
USP28-215ENST00000545608 SLC2A3P11169 496 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 ABCB4P21439 1286 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 CD38P28907 300 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 DRD3P35462 400 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 NNMTP40261 264 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 ADPRHP54922 357 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 PPP2CBP62714 309 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 PPP2CAP67775 309 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 CENPCQ03188 943 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 SULT2A1Q06520 285 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 AUHQ13825 339 aaKnown RBP8.71□□□□□ -1.02
USP28-215ENST00000545608 EXOC3L4Q17RC7 722 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 EFHC1Q5JVL4 640 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 TBC1D3GQ6DHY5 549 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 TBC1D3CQ6IPX1 549 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 OLFML1Q6UWY5 402 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 C11orf57Q6ZUT1 292 aaPredicted RBP8.71□□□□□ -1.02
USP28-215ENST00000545608 FAM183BPQ6ZVS7 135 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 TBC1D3Q8IZP1 549 aaPredicted RBP8.71□□□□□ -1.02
USP28-215ENST00000545608 C1orf131Q8NDD1 294 aaKnown RBP8.71□□□□□ -1.02
USP28-215ENST00000545608 FAM174AQ8TBP5 190 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 RNF34Q969K3 372 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 FAM81BQ96LP2 452 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 RPRD1AQ96P16 312 aaPredicted RBP8.71□□□□□ -1.02
USP28-215ENST00000545608 ANLNQ9NQW6 1124 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 AASDHPPTQ9NRN7 309 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 DNAJC12Q9UKB3 198 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 VANGL2Q9ULK5 521 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 OR51B4Q9Y5P0 310 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 HS3ST4Q9Y661 456 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 PLXNB3Q9ULL4 1909 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 PKD1L2Q7Z442 2459 aa8.71□□□□□ -1.02
USP28-215ENST00000545608 AKAP13Q12802 2813 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 ZFYVE26Q68DK2 2539 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.7□□□□□ -1.02
USP28-215ENST00000545608 GTPBP10A4D1E9 387 aaKnown RBP8.7□□□□□ -1.02
USP28-215ENST00000545608 I6L893 689 aaPredicted RBP8.7□□□□□ -1.02
USP28-215ENST00000545608 M0QYT0 321 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 TLR4O00206 839 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 LATO43561 262 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 HSF2BPO75031 334 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 RTN2O75298 545 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 PAGE1O75459 146 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 CNTN5O94779 1100 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 ITGAVP06756 1048 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 TFE3P19532 575 aaPredicted RBP8.7□□□□□ -1.02
USP28-215ENST00000545608 NOS2P35228 1153 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 OXCT1P55809 520 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 SLC6A3Q01959 620 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 CYP4F3Q08477 520 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 BNIP3Q12983 259 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 NME3Q13232 169 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 ZNF177Q13360 481 aaPredicted RBP8.7□□□□□ -1.02
USP28-215ENST00000545608 ELAVL3Q14576 367 aaKnown RBP8.7□□□□□ -1.02
USP28-215ENST00000545608 DLG2Q15700 870 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 SMAD1Q15797 465 aaKnown RBP8.7□□□□□ -1.02
USP28-215ENST00000545608 POM121L1PQ3SYA9 428 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 C5orf22Q49AR2 442 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 ACCSLQ4AC99 568 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 PTPN20Q4JDL3 420 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 RABGAP1LQ5R372 815 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 TTC39BQ5VTQ0 682 aaPredicted RBP8.7□□□□□ -1.02
USP28-215ENST00000545608 OTUD1Q5VV17 481 aaPredicted RBP8.7□□□□□ -1.02
USP28-215ENST00000545608 DPY19L2P1Q6NXN4 242 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 DHRS13Q6UX07 377 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 SLC47A2Q86VL8 602 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 SPATS2Q86XZ4 545 aaKnown RBP8.7□□□□□ -1.02
USP28-215ENST00000545608 DEPDC4Q8N2C3 294 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 SAP25Q8TEE9 199 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 OR8D1Q8WZ84 308 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 FAM131CQ96AQ9 280 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 SKA1Q96BD8 255 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 SERAC1Q96JX3 654 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 SPAG5Q96R06 1193 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 FEM1AQ9BSK4 669 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 SLC6A16Q9GZN6 736 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 SIK2Q9H0K1 926 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 PLCB1Q9NQ66 1216 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 ARHGAP20Q9P2F6 1191 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 FTSJ1Q9UET6 329 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 PPM1HQ9ULR3 514 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 NOVA2Q9UNW9 492 aaKnown RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms