RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 SLC45A4Q5BKX6 768 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 FAM78AQ5JUQ0 283 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 TEX35Q5T0J7 233 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 TMCO4Q5TGY1 634 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 HEATR6Q6AI08 1181 aaKnown RBP9.75□□□□□ -0.85
YBX3-215ENST00000544504 TIGD7Q6NT04 549 aaPredicted RBP9.75□□□□□ -0.85
YBX3-215ENST00000544504 DARS2Q6PI48 645 aaKnown RBP9.75□□□□□ -0.85
YBX3-215ENST00000544504 C1orf228Q6PIY5 440 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 GSTA5Q7RTV2 222 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 ANKS1BQ7Z6G8 1248 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 NLRP14Q86W24 1093 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 KLHL7Q8IXQ5 586 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 YAF2Q8IY57 180 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 MYRIPQ8NFW9 859 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 DEPDC1BQ8WUY9 529 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 TFB1MQ8WVM0 346 aaKnown RBP9.75□□□□□ -0.85
YBX3-215ENST00000544504 C1orf54Q8WWF1 131 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 HDAC11Q96DB2 347 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 CCDC114Q96M63 670 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 HERPUD2Q9BSE4 406 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 DDX47Q9H0S4 455 aaKnown RBP9.75□□□□□ -0.85
YBX3-215ENST00000544504 MAGEH1Q9H213 219 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 DTLQ9NZJ0 730 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 NEU3Q9UQ49 428 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 SNX10Q9Y5X0 201 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 NUMBLQ9Y6R0 609 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 CEP295Q9C0D2 2601 aa9.75□□□□□ -0.85
YBX3-215ENST00000544504 C2orf16Q68DN1 1984 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.74□□□□□ -0.85
YBX3-215ENST00000544504 GOLGA6L7A0A1B0GV03 622 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 ILVBLA1L0T0 632 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 TARSL2A2RTX5 802 aaKnown RBP9.74□□□□□ -0.85
YBX3-215ENST00000544504 FAM170BA6NMN3 283 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 GFRA2O00451 464 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 MFSD11O43934 449 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 LRP3O75074 770 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 NFATC1O95644 943 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 ADH1CP00326 375 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 PECAM1P16284 738 aaPredicted RBP9.74□□□□□ -0.85
YBX3-215ENST00000544504 SLC6A4P31645 630 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 GGCXP38435 758 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 SHC2P98077 582 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 GBE1Q04446 702 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 ADCY2Q08462 1091 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 SPEM2Q0P670 501 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 GALNT2Q10471 571 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 SNX1Q13596 522 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 SLC12A1Q13621 1099 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 CDH18Q13634 790 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 UBXN2BQ14CS0 331 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 POLD3Q15054 466 aaPredicted RBP9.74□□□□□ -0.85
YBX3-215ENST00000544504 PPP1R7Q15435 360 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 OASLQ15646 514 aaKnown RBP9.74□□□□□ -0.85
YBX3-215ENST00000544504 ANO4Q32M45 955 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 AFMIDQ63HM1 303 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 RFWD3Q6PCD5 774 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 BBS7Q8IWZ6 715 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 ATPAF2Q8N5M1 289 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 CCDC89Q8N998 374 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 CCNYQ8ND76 341 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 TTC16Q8NEE8 873 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 DDI1Q8WTU0 396 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 NSMCE1Q8WV22 266 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 ATG4AQ8WYN0 398 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 ATP2A3Q93084 1043 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 FATE1Q969F0 183 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 IGSF8Q969P0 613 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 ELSPBP1Q96BH3 223 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 ZSWIM3Q96MP5 696 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 OLFM3Q96PB7 478 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 TSGA13Q96PP4 275 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 QKIQ96PU8 341 aaKnown RBP eCLIP9.74□□□□□ -0.85
YBX3-215ENST00000544504 VAT1Q99536 393 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 SLC2A11Q9BYW1 496 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 MAGEB5Q9BZ81 275 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 SMG9Q9H0W8 520 aaKnown RBP9.74□□□□□ -0.85
YBX3-215ENST00000544504 ETNK2Q9NVF9 386 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 DUS2Q9NX74 493 aaKnown RBP9.74□□□□□ -0.85
YBX3-215ENST00000544504 MPP6Q9NZW5 540 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 DNPEPQ9ULA0 475 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 RAB23Q9ULC3 237 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 HPCAL4Q9UM19 191 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 CCL26Q9Y258 94 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 TBC1D30Q9Y2I9 924 aa9.74□□□□□ -0.85
YBX3-215ENST00000544504 R3HDM2Q9Y2K5 976 aaKnown RBP9.74□□□□□ -0.85
YBX3-215ENST00000544504 UTP11Q9Y3A2 253 aaKnown RBP9.74□□□□□ -0.85
YBX3-215ENST00000544504 CXorf51AA0A1B0GTR3 108 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 ZSCAN5CA6NGD5 496 aaPredicted RBP9.73□□□□□ -0.85
YBX3-215ENST00000544504 HEPACAM2A8MVW5 462 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 H0Y626 953 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 SGK1O00141 431 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 NRG2O14511 850 aaPredicted RBP9.73□□□□□ -0.85
YBX3-215ENST00000544504 FOXD2O60548 495 aaPredicted RBP9.73□□□□□ -0.85
YBX3-215ENST00000544504 TSPAN3O60637 253 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 TBL1XO60907 577 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 ECI2O75521 394 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 LUC7L3O95232 432 aaKnown RBP9.73□□□□□ -0.85
YBX3-215ENST00000544504 RHOCP08134 193 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 CCNCP24863 283 aa9.73□□□□□ -0.85
YBX3-215ENST00000544504 GARSP41250 739 aaKnown RBP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms