RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	NEBL	O76041	1014 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	APOC2	P02655	101 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	DLD	P09622	509 aa	Known RBP	10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	PECAM1	P16284	738 aa	Predicted RBP	10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	GLDC	P23378	1020 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	TARS	P26639	723 aa	Known RBP	10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	AP1B1	Q10567	949 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	SLC10A2	Q12908	348 aa	Predicted RBP	10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	SERINC3	Q13530	473 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	EIF4H	Q15056	248 aa	Known RBP	10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	E2F5	Q15329	346 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	ACCSL	Q4AC99	568 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	FBXO43	Q4G163	708 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	DGKK	Q5KSL6	1271 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	PAPD7	Q5XG87	772 aa	Known RBP	10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	AFMID	Q63HM1	303 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	TMEM215	Q68D42	235 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	SDE2	Q6IQ49	451 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	LINGO4	Q6UY18	593 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	ZC3H18	Q86VM9	953 aa	Known RBP	10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	LRRC49	Q8IUZ0	686 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	ARHGAP12	Q8IWW6	846 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	CHPF	Q8IZ52	775 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	ZNF513	Q8N8E2	541 aa	Predicted RBP	10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	ATP11C	Q8NB49	1132 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	TTC13	Q8NBP0	860 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	LRRN4	Q8WUT4	740 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	TTC17	Q96AE7	1141 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	ACD	Q96AP0	544 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	ALG14	Q96F25	216 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	MS4A14	Q96JA4	679 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	NAP1L3	Q99457	506 aa	Predicted RBP	10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	FAM118B	Q9BPY3	351 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	HERPUD2	Q9BSE4	406 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	ACE2	Q9BYF1	805 aa	Predicted RBP	10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	ZDHHC4	Q9NPG8	344 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	DTL	Q9NZJ0	730 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	SEPT10	Q9P0V9	454 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	VPS51	Q9UID3	782 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	ERVW-1	Q9UQF0	538 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	MTF2	Q9Y483	593 aa	Predicted RBP	10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	OR51B4	Q9Y5P0	310 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	RAD54B	Q9Y620	910 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	OBSL1	O75147	1896 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	TCF20	Q9UGU0	1960 aa	Known RBP	10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545		A0A0A0MRY4	1105 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	TCRBV7S2A1N4T	A0A589	114 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	TMEM221	A6NGB7	291 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	SHISA7	A6NL88	538 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	ESPN	B1AK53	854 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545		J3KR12	359 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545		M0R296	226 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	PGRMC1	O00264	195 aa	Known RBP	10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	MCF2L	O15068	1137 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	BNIP3L	O60238	219 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	RNF40	O75150	1001 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	URI1	O94763	535 aa	Predicted RBP	10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	PRLR	P16471	622 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	GARS	P41250	739 aa	Known RBP	10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	WAS	P42768	502 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	PAFAH1B1	P43034	410 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	GEMIN4	P57678	1058 aa	Known RBP	10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	EIF3E	P60228	445 aa	Known RBP	10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	OTUD4	Q01804	1114 aa	Known RBP	10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	SLC20A2	Q08357	652 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	GALNT2	Q10471	571 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	DNTTIP2	Q5QJE6	756 aa	Known RBP	10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	EGFLAM	Q63HQ2	1017 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	DARS2	Q6PI48	645 aa	Known RBP	10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	SERPINA13P	Q6UXR4	307 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	ARHGAP36	Q6ZRI8	547 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	B4GALNT4	Q76KP1	1039 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	KIF18A	Q8NI77	898 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	ACTL9	Q8TC94	416 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	TFB1M	Q8WVM0	346 aa	Known RBP	10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	LGMN	Q99538	433 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	FERMT1	Q9BQL6	677 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	BRD8	Q9H0E9	1235 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	SMARCAL1	Q9NZC9	954 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	UBA2	Q9UBT2	640 aa	Predicted RBP	10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	SLCO3A1	Q9UIG8	710 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	SIT1	Q9Y3P8	196 aa		10.37	□□□□□ -0.75
CPSF7-221	ENST00000543545	UNC80	Q8N2C7	3258 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	NUP210	Q8TEM1	1887 aa	Predicted RBP	10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	F5	P12259	2224 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	GOLGA6L10	A0A0M3HER8	536 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	ANTXRL	A6NF34	631 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545		K7ERQ8	282 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	TNFRSF10A	O00220	468 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	KRIT1	O00522	736 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	CES2	O00748	559 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	PRAMEF11	O60813	436 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	ZMPSTE24	O75844	475 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	KLF8	O95600	359 aa	Predicted RBP	10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	MT-CO1	P00395	513 aa		10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	PDGFB	P01127	241 aa	Predicted RBP	10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	SRPRA	P08240	638 aa	Known RBP	10.36	□□□□□ -0.75
CPSF7-221	ENST00000543545	RBP3	P10745	1247 aa		10.36	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms