RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 CREB5Q02930 508 aa13.43□□□□□ -0.26
LTBR-208ENST00000541005 GNA12Q03113 381 aa13.43□□□□□ -0.26
LTBR-208ENST00000541005 TBX2Q13207 712 aaPredicted RBP13.43□□□□□ -0.26
LTBR-208ENST00000541005 SLC18A3Q16572 532 aa13.43□□□□□ -0.26
LTBR-208ENST00000541005 LYSMD4Q5XG99 296 aa13.43□□□□□ -0.26
LTBR-208ENST00000541005 SCYL2Q6P3W7 929 aa13.43□□□□□ -0.26
LTBR-208ENST00000541005 CYP4V2Q6ZWL3 525 aaPredicted RBP13.43□□□□□ -0.26
LTBR-208ENST00000541005 USP30Q70CQ3 517 aa13.43□□□□□ -0.26
LTBR-208ENST00000541005 PSTKQ8IV42 348 aaKnown RBP13.43□□□□□ -0.26
LTBR-208ENST00000541005 TMEFF1Q8IYR6 380 aa13.43□□□□□ -0.26
LTBR-208ENST00000541005 NIPA2Q8N8Q9 360 aa13.43□□□□□ -0.26
LTBR-208ENST00000541005 RTL3Q8N8U3 475 aaKnown RBP13.43□□□□□ -0.26
LTBR-208ENST00000541005 CADM4Q8NFZ8 388 aa13.43□□□□□ -0.26
LTBR-208ENST00000541005 TMEM131Q92545 1883 aa13.43□□□□□ -0.26
LTBR-208ENST00000541005 TOE1Q96GM8 510 aaKnown RBP13.43□□□□□ -0.26
LTBR-208ENST00000541005 FAM129BQ96TA1 746 aa13.43□□□□□ -0.26
LTBR-208ENST00000541005 EPAS1Q99814 870 aa13.43□□□□□ -0.26
LTBR-208ENST00000541005 ACE2Q9BYF1 805 aaPredicted RBP13.43□□□□□ -0.26
LTBR-208ENST00000541005 MAGEB5Q9BZ81 275 aa13.43□□□□□ -0.26
LTBR-208ENST00000541005 THAP2Q9H0W7 228 aa13.43□□□□□ -0.26
LTBR-208ENST00000541005 PABPC3Q9H361 631 aaKnown RBP13.43□□□□□ -0.26
LTBR-208ENST00000541005 PILRBQ9UKJ0 227 aa13.43□□□□□ -0.26
LTBR-208ENST00000541005 PCNX2A6NKB5 2137 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 WASH4PA8MWX3 477 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 FGF10O15520 208 aaPredicted RBP13.42□□□□□ -0.26
LTBR-208ENST00000541005 SNAP91O60641 907 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 RNASEH1O60930 286 aaKnown RBP13.42□□□□□ -0.26
LTBR-208ENST00000541005 LRCH4O75427 683 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 RNF8O76064 485 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 MIPP30301 263 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 ZNF33AQ06730 810 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 CST6Q15828 149 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 RWDD4Q6NW29 188 aaKnown RBP13.42□□□□□ -0.26
LTBR-208ENST00000541005 CACUL1Q86Y37 369 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 SYT12Q8IV01 421 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 CNGA4Q8IV77 575 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 SLC41A1Q8IVJ1 513 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 PYROXD2Q8N2H3 581 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 OR7D4Q8NG98 312 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 FOXJ1Q92949 421 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 PEBP4Q96S96 227 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 MAGEH1Q9H213 219 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 NDFIP2Q9NV92 336 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 MYO1AQ9UBC5 1043 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 EVLQ9UI08 416 aaPredicted RBP13.42□□□□□ -0.26
LTBR-208ENST00000541005 AP4E1Q9UPM8 1137 aa13.42□□□□□ -0.26
LTBR-208ENST00000541005 DCHS1Q96JQ0 3298 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 C10orf142B7Z368 130 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 NDUFS2O75306 463 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 ADH1BP00325 375 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 MT-CO1P00395 513 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 DNTTP04053 509 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 SRCP12931 536 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 VAV1P15498 845 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 C5AR1P21730 350 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 ITPKAP23677 461 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 EPHB2P29323 1055 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 NUMBP49757 651 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 SERPINH1P50454 418 aaKnown RBP13.41□□□□□ -0.26
LTBR-208ENST00000541005 ZNF135P52742 658 aaPredicted RBP13.41□□□□□ -0.26
LTBR-208ENST00000541005 LIMK1P53667 647 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 GALCP54803 685 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 ARF5P84085 180 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 GFPT1Q06210 699 aaPredicted RBP13.41□□□□□ -0.26
LTBR-208ENST00000541005 SLC20A2Q08357 652 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 SFSWAPQ12872 951 aaKnown RBP13.41□□□□□ -0.26
LTBR-208ENST00000541005 PIGHQ14442 188 aaPredicted RBP13.41□□□□□ -0.26
LTBR-208ENST00000541005 DLG2Q15700 870 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 TSR1Q2NL82 804 aaKnown RBP13.41□□□□□ -0.26
LTBR-208ENST00000541005 CCDC122Q5T0U0 273 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 ERMARDQ5T6L9 678 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 RETSATQ6NUM9 610 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 ARMCX6Q7L4S7 300 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 RABEPKQ7Z6M1 372 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 STK40Q8N2I9 435 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 OR8D1Q8WZ84 308 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 ARHGEF2Q92974 986 aaKnown RBP13.41□□□□□ -0.26
LTBR-208ENST00000541005 FAM131CQ96AQ9 280 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 HSPA12BQ96MM6 686 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 SNRNP25Q9BV90 132 aaKnown RBP13.41□□□□□ -0.26
LTBR-208ENST00000541005 NUP85Q9BW27 656 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 TRIM5Q9C035 493 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 CEP44Q9C0F1 390 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 RBSNQ9H1K0 784 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 NOL6Q9H6R4 1146 aaKnown RBP13.41□□□□□ -0.26
LTBR-208ENST00000541005 CATSPERBQ9H7T0 1116 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 SGK2Q9HBY8 427 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 ATP13A1Q9HD20 1204 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 ZNHIT6Q9NWK9 470 aaKnown RBP13.41□□□□□ -0.26
LTBR-208ENST00000541005 FZD4Q9ULV1 537 aa13.41□□□□□ -0.26
LTBR-208ENST00000541005 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.41□□□□□ -0.26
LTBR-208ENST00000541005 CBX4O00257 560 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 MCF2LO15068 1137 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 MID1O15344 667 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 PRPSAP2O60256 369 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 RAMP2O60895 175 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 SDHBP21912 280 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 GLDCP23378 1020 aa13.4□□□□□ -0.26
LTBR-208ENST00000541005 ADKP55263 362 aaKnown RBP13.4□□□□□ -0.26
LTBR-208ENST00000541005 GEMIN4P57678 1058 aaKnown RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms