RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 SERINC3Q13530 473 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 RFTN1Q14699 578 aaPredicted RBP17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 FUT11Q495W5 492 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 INO80DQ53TQ3 878 aaPredicted RBP17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 ARTNQ5T4W7 220 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 SEL1L2Q5TEA6 688 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 SLC9A4Q6AI14 798 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 TIGD7Q6NT04 549 aaPredicted RBP17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 SPOCD1Q6ZMY3 1216 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 SYT13Q7L8C5 426 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 ZNF354CQ86Y25 554 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 CHPFQ8IZ52 775 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 TTC13Q8NBP0 860 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 WFDC5Q8TCV5 224 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 MAIP1Q8WWC4 291 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 ALG14Q96F25 216 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 ZNF599Q96NL3 588 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 SPON2Q9BUD6 331 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 FOXQ1Q9C009 403 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 CEP44Q9C0F1 390 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 LRRC19Q9H756 370 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 FBRSL1Q9HCM7 1045 aaKnown RBP17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 POLMQ9NP87 494 aaPredicted RBP17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 HS3ST2Q9Y278 367 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 HYOU1Q9Y4L1 999 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 COL4A3Q01955 1670 aa17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 TARSL2A2RTX5 802 aaKnown RBP17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 C3orf70A6NLC5 250 aaPredicted RBP17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 SYNCRIPO60506 623 aaKnown RBP17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 ALDH1A2O94788 518 aa17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 PAPSS2O95340 614 aaPredicted RBP17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 FTCDO95954 541 aa17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 AMPD1P23109 780 aa17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 DGKEP52429 567 aa17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 ENPP2Q13822 863 aa17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 FNDC3BQ53EP0 1204 aaKnown RBP17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 AFMIDQ63HM1 303 aa17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 CWF19L1Q69YN2 538 aaKnown RBP17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 SERPINA13PQ6UXR4 307 aa17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 RFX6Q8HWS3 928 aa17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 CAMKK1Q8N5S9 505 aa17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 PCDH19Q8TAB3 1148 aa17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 FATE1Q969F0 183 aa17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 RNF25Q96BH1 459 aaPredicted RBP17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 MAGEB5Q9BZ81 275 aa17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 TRMT1Q9NXH9 659 aaKnown RBP17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 MMP17Q9ULZ9 603 aa17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 ERVW-1Q9UQF0 538 aa17.91■□□□□ 0.46
CLSTN3-210ENST00000540931 FAM186AA6NE01 2351 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 MIA3Q5JRA6 1907 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 CBX4O00257 560 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 PPP1R12AO14974 1030 aaPredicted RBP17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 MTSS1O43312 755 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 GALR2O43603 387 aaPredicted RBP17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 MZF1P28698 734 aaPredicted RBP17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 TIE1P35590 1138 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 IRAK1P51617 712 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 IL10RBQ08334 325 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 FZD5Q13467 585 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 PDK1Q15118 436 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 ZNF569Q5MCW4 686 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 CCDC181Q5TID7 509 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 MFSD7Q6UXD7 560 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 PLPP6Q8IY26 295 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 ATPAF2Q8N5M1 289 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 IL17RCQ8NAC3 791 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 RPLP0P6Q8NHW5 317 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 P3H4Q92791 437 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 ISG20Q96AZ6 181 aaKnown RBP17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 HAUS1Q96CS2 278 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 P2RY11Q96G91 374 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 NAP1L3Q99457 506 aaPredicted RBP17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 GABRG3Q99928 467 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 FRMD8P1Q9BZ68 369 aaPredicted RBP17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 GOLPH3Q9H4A6 298 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 AMACRQ9UHK6 382 aa17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 INTS6Q9UL03 887 aaKnown RBP17.9■□□□□ 0.46
CLSTN3-210ENST00000540931 MYO15AQ9UKN7 3530 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 hCG_1818297A0A087WSY0 165 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 A0A0D9SEW6 157 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 A0A0U1RQJ8 604 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 EDDM13A0A1B0GTR0 161 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 TRIM24O15164 1050 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 ATP9BO43861 1147 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 CD48P09326 243 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 HSPA9P38646 679 aaKnown RBP17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 RECQLP46063 649 aaPredicted RBP17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 CXCL12P48061 93 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 RENBPP51606 427 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 NRLP54845 237 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 ZNF234Q14588 700 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 C2orf27AQ580R0 203 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 BBS12Q6ZW61 710 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 DSG4Q86SJ6 1040 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 APCDD1Q8J025 514 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 ATRIPQ8WXE1 791 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 KRT35Q92764 455 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 PBKQ96KB5 322 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 FAM126AQ9BYI3 521 aaPredicted RBP17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 OSBPL8Q9BZF1 889 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms