RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 CBWD5Q5RIA9 395 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 FOXD4L3Q6VB84 417 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 DCP2Q8IU60 420 aaKnown RBP11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 UBR7Q8N806 425 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 OR13H1Q8NG92 308 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 FAM174AQ8TBP5 190 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 KLK6Q92876 244 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 ERCC4Q92889 916 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 ATXN7L3BQ96GX2 97 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 PRR11Q96HE9 360 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 BTN2A3PQ96KV6 586 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 MYOCQ99972 504 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 CALN1Q9BXU9 219 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 FAM117AQ9C073 453 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 MIS12Q9H081 205 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 CAAP1Q9H8G2 361 aa11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 HEMK1Q9Y5R4 338 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-209ENST00000539982 UBR5O95071 2799 aaPredicted RBP11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 CDRT15L2A8MXV6 281 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 F5H5T6 163 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 RIOK3O14730 519 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 APOEP02649 317 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 HNRNPA2B1P22626 353 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 TBXAS1P24557 533 aaPredicted RBP11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 AKT2P31751 481 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 NUMBP49757 651 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 HNRNPKP61978 463 aaKnown RBP eCLIP11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 NFATC3Q12968 1075 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 ZC3H12AQ5D1E8 599 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 ZNF542PQ5EBM4 170 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 PIP5KL1Q5T9C9 394 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 FOXD4L5Q5VV16 416 aaPredicted RBP11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 SYPL2Q5VXT5 272 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 ATL3Q6DD88 541 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 TMEM270Q6UE05 265 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 XKR5Q6UX68 686 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 BEND5Q7L4P6 421 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 ABI3BPQ7Z7G0 1075 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 TAC4Q86UU9 113 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 HORMAD1Q86X24 394 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 CHSY1Q86X52 802 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 CCAR2Q8N163 923 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 ARL14Q8N4G2 192 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 EXD3Q8N9H8 876 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 TPCN2Q8NHX9 752 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 FOXD4L4Q8WXT5 416 aaPredicted RBP11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 NOX5Q96PH1 765 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 ZSWIM1Q9BR11 485 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 DNAJC28Q9NX36 388 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 NCKIPSDQ9NZQ3 722 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 SLC25A13Q9UJS0 675 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 RCOR1Q9UKL0 485 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 CFAP45Q9UL16 551 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 ENTPD2Q9Y5L3 495 aa11.95□□□□□ -0.5
CLSTN3-209ENST00000539982 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 A0A1B0GVL5 298 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 CPED1A4D0V7 1026 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 KCNU1A8MYU2 1149 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 M0QYV0 167 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 CETN3O15182 167 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 SART1O43290 800 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 NEBLO76041 1014 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 EPB41P11171 864 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 PFKFB1P16118 471 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 CMA1P23946 247 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 MLLT3P42568 568 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 CLDN2P57739 230 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 LRMPQ12912 555 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 CLN3Q13286 438 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 ZNF177Q13360 481 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 STILQ15468 1287 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 CDKN3Q16667 212 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 TTC39BQ5VTQ0 682 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 CXorf57Q6NSI4 855 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 ZCCHC8Q6NZY4 707 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 GCNT7Q6ZNI0 430 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 RBM44Q6ZP01 1051 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 Q6ZSR6 202 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 Q6ZVU0 165 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 LURAP1LQ8IV03 231 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 SLC22A18ASQ8N1D0 253 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 ATP6V0D2Q8N8Y2 350 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 FAM149B1Q96BN6 582 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 ALG14Q96F25 216 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 CCNL2Q96S94 520 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 PRMT1Q99873 361 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 FEM1AQ9BSK4 669 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 FZD3Q9NPG1 666 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 SLC12A6Q9UHW9 1150 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 SALL4Q9UJQ4 1053 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 FARP1Q9Y4F1 1045 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 HS3ST3A1Q9Y663 406 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 CSNK1G3Q9Y6M4 447 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 PTPN13Q12923 2485 aa11.94□□□□□ -0.5
CLSTN3-209ENST00000539982 EME2A4GXA9 379 aaPredicted RBP11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 TCAF2A6NFQ2 919 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 A6NNZ2 444 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 RNF225M0QZC1 329 aaPredicted RBP11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 EFSO43281 561 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms