RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 SEMA5AQ13591 1074 aa21.68■■□□□ 1.06
VPS28-212ENST00000530836 TPSAB1Q15661 275 aa21.68■■□□□ 1.06
VPS28-212ENST00000530836 PARP15Q460N3 678 aa21.68■■□□□ 1.06
VPS28-212ENST00000530836 ITPRIPL1Q6GPH6 555 aa21.68■■□□□ 1.06
VPS28-212ENST00000530836 LGI2Q8N0V4 545 aa21.68■■□□□ 1.06
VPS28-212ENST00000530836 PDIK1LQ8N165 341 aa21.68■■□□□ 1.06
VPS28-212ENST00000530836 ARL14EPQ8N8R7 260 aaPredicted RBP21.68■■□□□ 1.06
VPS28-212ENST00000530836 ZFRQ96KR1 1074 aaKnown RBP21.68■■□□□ 1.06
VPS28-212ENST00000530836 ZSWIM3Q96MP5 696 aa21.68■■□□□ 1.06
VPS28-212ENST00000530836 TTC25Q96NG3 672 aa21.68■■□□□ 1.06
VPS28-212ENST00000530836 TASP1Q9H6P5 420 aa21.68■■□□□ 1.06
VPS28-212ENST00000530836 ETNK1Q9HBU6 452 aa21.68■■□□□ 1.06
VPS28-212ENST00000530836 SEPT10Q9P0V9 454 aa21.68■■□□□ 1.06
VPS28-212ENST00000530836 LSM7Q9UK45 103 aaKnown RBP21.68■■□□□ 1.06
VPS28-212ENST00000530836 AGO1Q9UL18 857 aaKnown RBP21.68■■□□□ 1.06
VPS28-212ENST00000530836 E7EVH7 732 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 NUDT17P0C025 328 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 PTPN3P26045 913 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 CDH4P55283 916 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 SARNPP82979 210 aaKnown RBP21.67■■□□□ 1.06
VPS28-212ENST00000530836 ANO4Q32M45 955 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 TEX44Q53QW1 395 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 ALFQ53S48 1182 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 STXBP5Q5T5C0 1151 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 GPR158Q5T848 1215 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 PID1Q7Z2X4 250 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 TP53INP2Q8IXH6 220 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 KRT222Q8N1A0 295 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 GOLGA6L1Q8N7Z2 621 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 MCUQ8NE86 351 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 ADAMTS19Q8TE59 1207 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 ZIM3Q96PE6 472 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 SEMA4AQ9H3S1 761 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 EIF2B3Q9NR50 452 aaKnown RBP21.67■■□□□ 1.06
VPS28-212ENST00000530836 KLHL8Q9P2G9 620 aaPredicted RBP21.67■■□□□ 1.06
VPS28-212ENST00000530836 PLAAQ9Y263 795 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 CPQQ9Y646 472 aa21.67■■□□□ 1.06
VPS28-212ENST00000530836 MATN3O15232 486 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 MAFKO60675 156 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 CLDN11O75508 207 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 TTC4O95801 387 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 KLKB1P03952 638 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 CROCCP2Q86T23 111 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 ZNF567Q8N184 647 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 LRRN4Q8WUT4 740 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 PPP1R2P1Q96PQ5 205 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 CYP2S1Q96SQ9 504 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 SLC46A2Q9BY10 475 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 CDC42EP4Q9H3Q1 356 aaKnown RBP21.66■■□□□ 1.06
VPS28-212ENST00000530836 ZNF212Q9UDV6 495 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 VCANP13611 3396 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 GOLGA6L7A0A1B0GV03 622 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 KCNK1O00180 336 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 RIPK2O43353 540 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 RAMP2O60895 175 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 CNTN5O94779 1100 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 METTL18O95568 372 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 CKMP06732 381 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 OR1E1P30953 314 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 SLC6A4P31645 630 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 IFI35P80217 286 aaPredicted RBP21.66■■□□□ 1.06
VPS28-212ENST00000530836 ANKRD22Q5VYY1 191 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 CHST9Q7L1S5 443 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 TFAP2DQ7Z6R9 452 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 MAB21L3Q8N8X9 362 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 NDFIP2Q9NV92 336 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 SMPD4Q9NXE4 827 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 LIMD1Q9UGP4 676 aa21.66■■□□□ 1.06
VPS28-212ENST00000530836 ERI2A8K979 691 aaKnown RBP21.65■■□□□ 1.06
VPS28-212ENST00000530836 E7ESA3 106 aa21.65■■□□□ 1.06
VPS28-212ENST00000530836 ALOX15BO15296 676 aa21.65■■□□□ 1.06
VPS28-212ENST00000530836 TMEM63AO94886 807 aa21.65■■□□□ 1.06
VPS28-212ENST00000530836 APRTP07741 180 aa21.65■■□□□ 1.06
VPS28-212ENST00000530836 IRF1P10914 325 aa21.65■■□□□ 1.06
VPS28-212ENST00000530836 WEE1P30291 646 aa21.65■■□□□ 1.06
VPS28-212ENST00000530836 MAGEA4P43358 317 aa21.65■■□□□ 1.06
VPS28-212ENST00000530836 PAPOLAP51003 745 aaKnown RBP21.65■■□□□ 1.06
VPS28-212ENST00000530836 FAM78AQ5JUQ0 283 aa21.65■■□□□ 1.06
VPS28-212ENST00000530836 HTR3DQ70Z44 454 aa21.65■■□□□ 1.06
VPS28-212ENST00000530836 GJD3Q8N144 294 aa21.65■■□□□ 1.06
VPS28-212ENST00000530836 NETO2Q8NC67 525 aa21.65■■□□□ 1.06
VPS28-212ENST00000530836 ZSCAN18Q8TBC5 510 aaPredicted RBP21.65■■□□□ 1.06
VPS28-212ENST00000530836 TEKT5Q96M29 485 aa21.65■■□□□ 1.06
VPS28-212ENST00000530836 ASB16Q96NS5 453 aa21.65■■□□□ 1.06
VPS28-212ENST00000530836 NECAB3Q96P71 396 aaPredicted RBP21.65■■□□□ 1.06
VPS28-212ENST00000530836 SLC22A12Q96S37 553 aa21.65■■□□□ 1.06
VPS28-212ENST00000530836 SAYSD1Q9NPB0 183 aa21.65■■□□□ 1.06
VPS28-212ENST00000530836 OBSL1O75147 1896 aa21.65■■□□□ 1.06
VPS28-212ENST00000530836 DENND4AQ7Z401 1863 aa21.65■■□□□ 1.06
VPS28-212ENST00000530836 DOCK4Q8N1I0 1966 aa21.64■■□□□ 1.06
VPS28-212ENST00000530836 A0A1B0GVM2 712 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 TYW5A2RUC4 315 aaKnown RBP21.64■■□□□ 1.05
VPS28-212ENST00000530836 GOLGA6CA6NDK9 693 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 TCAF2A6NFQ2 919 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 GOLGA6L10A6NI86 522 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 RASA4BC9J798 803 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 ANHXE9PGG2 379 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 AGPSO00116 658 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 RASA4O43374 803 aa21.64■■□□□ 1.05
VPS28-212ENST00000530836 GOLGA6DP0CG33 693 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms