RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 SLC6A20Q9NP91 592 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 CISHQ9NSE2 258 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 MIOSQ9NXC5 875 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 MARCH2Q9P0N8 246 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 GULP1Q9UBP9 304 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 HMGXB4Q9UGU5 601 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 DUSP13Q9UII6 198 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 ITGA11Q9UKX5 1188 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 DSEQ9UL01 958 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 OGDHLQ9ULD0 1010 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 C2CD2Q9Y426 696 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 ATP23Q9Y6H3 246 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 NAV2Q8IVL1 2488 aa4.37□□□□□ -1.71
CD44-226ENST00000527889 DOCK9Q9BZ29 2069 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 REV3LO60673 3130 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 DCHS1Q96JQ0 3298 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 UQCRHLA0A096LP55 91 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 GRID2IPA4D2P6 1211 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 CTAGE9A4FU28 777 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 CASTOR2A6NHX0 329 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 TRIM64CA6NLI5 447 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 FAM170BA6NMN3 283 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 TMEM110-MUSTN1A8MSY1 372 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 C22orf46C9J442 243 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 H3BS24 57 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 DNM1LO00429 736 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 HCRTO43612 131 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 NBNO60934 754 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 RTN2O75298 545 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 TACC1O75410 805 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 PALMO75781 387 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 DGKIO75912 1065 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 MED26O95402 600 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 FTCDO95954 541 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 FTLP02792 175 aaPredicted RBP4.36□□□□□ -1.71
CD44-226ENST00000527889 ATP1A1P05023 1023 aaKnown RBP4.36□□□□□ -1.71
CD44-226ENST00000527889 F13BP05160 661 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 RPLP2P05387 115 aaKnown RBP4.36□□□□□ -1.71
CD44-226ENST00000527889 UQCRHP07919 91 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 FAM163BP0C2L3 166 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 CLEC2LP0C7M8 214 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 KCNE1P15382 129 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 CD19P15391 556 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 SDHAP31040 664 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 MLH1P40692 756 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 CD151P48509 253 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 FNTBP49356 437 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 CLK1P49759 484 aaKnown RBP4.36□□□□□ -1.71
CD44-226ENST00000527889 CDK7P50613 346 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 SCNN1GP51170 649 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 DNA2P51530 1060 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 NDST1P52848 882 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 RAD23BP54727 409 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 YWHAEP62258 255 aaKnown RBP4.36□□□□□ -1.71
CD44-226ENST00000527889 TNNC1P63316 161 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 CDR2Q01850 454 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 IFT88Q13099 833 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 TMED1Q13445 227 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 SEMA5AQ13591 1074 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 ZBTB6Q15916 424 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 UGT8Q16880 541 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.36□□□□□ -1.71
CD44-226ENST00000527889 C2CD6Q53TS8 623 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 XKR4Q5GH76 650 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 CATSPEREQ5SY80 951 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 C10orf76Q5T2E6 689 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 NAA35Q5VZE5 725 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 C9orf57Q5W0N0 161 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 HLA-DQA1Q5Y7H0 255 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 CCDC149Q6ZUS6 474 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 USP45Q70EL2 814 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 LRRC8DQ7L1W4 858 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 ZNF765Q7L2R6 523 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 RTN4RL1Q86UN2 441 aaPredicted RBP4.36□□□□□ -1.71
CD44-226ENST00000527889 FAM126BQ8IXS8 530 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 NLGN4XQ8N0W4 816 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 TXLNBQ8N3L3 684 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 Q8N3U1 123 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 SLC4A11Q8NBS3 891 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 ATXN2LQ8WWM7 1075 aaKnown RBP4.36□□□□□ -1.71
CD44-226ENST00000527889 LINC01599Q8WXQ3 324 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 CPA5Q8WXQ8 436 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 TFAP2BQ92481 460 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 RABGGTAQ92696 567 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 TAF4BQ92750 862 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 UBE2FQ969M7 185 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 ZNF653Q96CK0 615 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 C1GALT1C1Q96EU7 318 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 ZNF333Q96JL9 665 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 FCRL2Q96LA5 508 aaPredicted RBP4.36□□□□□ -1.71
CD44-226ENST00000527889 SGCZQ96LD1 299 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 FAM81BQ96LP2 452 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 PPP1R10Q96QC0 940 aaKnown RBP4.36□□□□□ -1.71
CD44-226ENST00000527889 TWNKQ96RR1 684 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 MMS19Q96T76 1030 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 UHRF1Q96T88 793 aaPredicted RBP4.36□□□□□ -1.71
CD44-226ENST00000527889 ZSWIM1Q9BR11 485 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 MRPL45Q9BRJ2 306 aaKnown RBP4.36□□□□□ -1.71
CD44-226ENST00000527889 ELOVL4Q9GZR5 314 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 THAP2Q9H0W7 228 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms