RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 PPM1KQ8N3J5 372 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 SLC25A41Q8N5S1 370 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 Q8N9G6 341 aaPredicted RBP5.93□□□□□ -1.46
CD44-225ENST00000527326 LRRC20Q8TCA0 184 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 PNPT1Q8TCS8 783 aaKnown RBP5.93□□□□□ -1.46
CD44-225ENST00000527326 GLG1Q92896 1179 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 PHKBQ93100 1093 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 LRRC59Q96AG4 307 aaKnown RBP5.93□□□□□ -1.46
CD44-225ENST00000527326 SGK3Q96BR1 496 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 TOE1Q96GM8 510 aaKnown RBP5.93□□□□□ -1.46
CD44-225ENST00000527326 TMEM80Q96HE8 168 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 SH3YL1Q96HL8 342 aaPredicted RBP5.93□□□□□ -1.46
CD44-225ENST00000527326 ZNF496Q96IT1 587 aaPredicted RBP5.93□□□□□ -1.46
CD44-225ENST00000527326 CLPTM1LQ96KA5 538 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 ZNF560Q96MR9 790 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 CITED4Q96RK1 184 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 CLSTN3Q9BQT9 956 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 TRIM56Q9BRZ2 755 aaKnown RBP5.93□□□□□ -1.46
CD44-225ENST00000527326 TARS2Q9BW92 718 aaKnown RBP5.93□□□□□ -1.46
CD44-225ENST00000527326 PACSIN1Q9BY11 444 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 YTHDF1Q9BYJ9 559 aaKnown RBP5.93□□□□□ -1.46
CD44-225ENST00000527326 ZC3H12CQ9C0D7 883 aaKnown RBP5.93□□□□□ -1.46
CD44-225ENST00000527326 NMUR2Q9GZQ4 415 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 OR51B5Q9H339 312 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 STN1Q9H668 368 aaKnown RBP5.93□□□□□ -1.46
CD44-225ENST00000527326 NOL6Q9H6R4 1146 aaKnown RBP5.93□□□□□ -1.46
CD44-225ENST00000527326 GPN2Q9H9Y4 310 aaPredicted RBP5.93□□□□□ -1.46
CD44-225ENST00000527326 KCNK13Q9HB14 408 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 CABP5Q9NP86 173 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 FANCFQ9NPI8 374 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 TIGARQ9NQ88 270 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 ZC4H2Q9NQZ6 224 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 FBXO6Q9NRD1 293 aaPredicted RBP5.93□□□□□ -1.46
CD44-225ENST00000527326 HOMER2Q9NSB8 354 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 KBTBD4Q9NVX7 518 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 SYBUQ9NX95 663 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 PKD2L2Q9NZM6 624 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 KCND2Q9NZV8 630 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 SLC24A2Q9UI40 661 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 ENPP5Q9UJA9 477 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 GMEB2Q9UKD1 530 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 NENFQ9UMX5 172 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 MAPRE3Q9UPY8 281 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 PA2G4Q9UQ80 394 aaKnown RBP5.93□□□□□ -1.46
CD44-225ENST00000527326 ZNF175Q9Y473 711 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 STON1Q9Y6Q2 735 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 SLC4A4Q9Y6R1 1079 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 FPGT-TNNI3KV9GXZ4 949 aa5.93□□□□□ -1.46
CD44-225ENST00000527326 COL22A1Q8NFW1 1626 aaPredicted RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 USP6P35125 1406 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 NWD2Q9ULI1 1742 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 EXOC1LA0A1B0GW35 172 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 C12orf71A8MTZ7 269 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 ZBTB42B2RXF5 422 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 TRDMT1O14717 391 aaKnown RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 ZNF213O14771 459 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 ATP2A1O14983 1001 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 TLR3O15455 904 aaKnown RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 CYP26A1O43174 497 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 KCNQ3O43525 872 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 PI15O43692 258 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 RFPL2O75678 378 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 SLITRK5O94991 958 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 NADKO95544 446 aaPredicted RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 UGT2B4P06133 528 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 RETP07949 1114 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 SERPINA6P08185 405 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 MYL2P10916 166 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 DBTP11182 482 aaKnown RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 ACTN1P12814 892 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 ICAM2P13598 275 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 ATF4P18848 351 aaPredicted RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 KRT15P19012 456 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 EIF2AK2P19525 551 aaKnown RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 GARTP22102 1010 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 PSMA3P25788 255 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 PSMA4P25789 261 aaKnown RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 PTX3P26022 381 aaPredicted RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 IL12AP29459 219 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 IDUAP35475 653 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 CPOXP36551 454 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 GP5P40197 560 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 MAGEA11P43364 429 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 CPA2P48052 419 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 GPR85P60893 370 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 TAP1Q03518 808 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 BST2Q10589 180 aaKnown RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 TRAF2Q12933 501 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 NAB1Q13506 487 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 SLC1A5Q15758 541 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 PFKFB3Q16875 520 aaPredicted RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 LETM2Q2VYF4 491 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 MTERF2Q49AM1 385 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 CEP55Q53EZ4 464 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 TTC38Q5R3I4 469 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 PERM1Q5SV97 790 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 DDX59Q5T1V6 619 aaKnown RBP eCLIP5.92□□□□□ -1.46
CD44-225ENST00000527326 UBAP2Q5T6F2 1119 aaKnown RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 PXDC1Q5TGL8 231 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 UBE2UQ5VVX9 321 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms