RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 AAGABQ6PD74 315 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 LCA5Q86VQ0 697 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 APLFQ8IW19 511 aaPredicted RBP21.65■■□□□ 1.06
VPS28-205ENST00000526204 EDEM1Q92611 657 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 AZIN2Q96A70 460 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 PGLYRP2Q96PD5 576 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 CDH19Q9H159 772 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 JCHAINP01591 159 aa21.64■■□□□ 1.06
VPS28-205ENST00000526204 PDHA1P08559 390 aa21.64■■□□□ 1.06
VPS28-205ENST00000526204 PRDX6P30041 224 aa21.64■■□□□ 1.06
VPS28-205ENST00000526204 CYP2C18P33260 490 aa21.64■■□□□ 1.06
VPS28-205ENST00000526204 PURAQ00577 322 aaKnown RBP21.64■■□□□ 1.06
VPS28-205ENST00000526204 LBRQ14739 615 aaKnown RBP21.64■■□□□ 1.06
VPS28-205ENST00000526204 SCML4Q8N228 414 aa21.64■■□□□ 1.06
VPS28-205ENST00000526204 RDH11Q8TC12 318 aa21.64■■□□□ 1.06
VPS28-205ENST00000526204 ZNF184Q99676 751 aaPredicted RBP21.64■■□□□ 1.06
VPS28-205ENST00000526204 CACNG4Q9UBN1 327 aa21.64■■□□□ 1.06
VPS28-205ENST00000526204 CPA4Q9UI42 421 aa21.64■■□□□ 1.06
VPS28-205ENST00000526204 ANKRD6Q9Y2G4 727 aa21.64■■□□□ 1.06
VPS28-205ENST00000526204 AAR2Q9Y312 384 aaKnown RBP21.64■■□□□ 1.06
VPS28-205ENST00000526204 WASF2Q9Y6W5 498 aa21.64■■□□□ 1.06
VPS28-205ENST00000526204 MEIS3P2A8K0S8 358 aa21.64■■□□□ 1.05
VPS28-205ENST00000526204 FSCN1Q16658 493 aaKnown RBP21.64■■□□□ 1.05
VPS28-205ENST00000526204 EPGNQ6UW88 154 aa21.64■■□□□ 1.05
VPS28-205ENST00000526204 RSPH3Q86UC2 560 aa21.64■■□□□ 1.05
VPS28-205ENST00000526204 KLHDC8BQ8IXV7 354 aa21.64■■□□□ 1.05
VPS28-205ENST00000526204 DPF3Q92784 378 aa21.64■■□□□ 1.05
VPS28-205ENST00000526204 VPS39Q96JC1 886 aa21.64■■□□□ 1.05
VPS28-205ENST00000526204 TSGA13Q96PP4 275 aa21.64■■□□□ 1.05
VPS28-205ENST00000526204 KIFC1Q9BW19 673 aa21.64■■□□□ 1.05
VPS28-205ENST00000526204 OSBPL2Q9H1P3 480 aa21.64■■□□□ 1.05
VPS28-205ENST00000526204 COG4Q9H9E3 785 aa21.64■■□□□ 1.05
VPS28-205ENST00000526204 ST3GAL5Q9UNP4 418 aa21.64■■□□□ 1.05
VPS28-205ENST00000526204 GIT1Q9Y2X7 761 aa21.64■■□□□ 1.05
VPS28-205ENST00000526204 E2F8A0AVK6 867 aa21.63■■□□□ 1.05
VPS28-205ENST00000526204 CCNT2O60583 730 aaKnown RBP21.63■■□□□ 1.05
VPS28-205ENST00000526204 SRGAP2BP0DMP2 458 aa21.63■■□□□ 1.05
VPS28-205ENST00000526204 NCF2P19878 526 aaPredicted RBP21.63■■□□□ 1.05
VPS28-205ENST00000526204 PRKAA2P54646 552 aa21.63■■□□□ 1.05
VPS28-205ENST00000526204 SLC25A3Q00325 362 aa21.63■■□□□ 1.05
VPS28-205ENST00000526204 ANO4Q32M45 955 aa21.63■■□□□ 1.05
VPS28-205ENST00000526204 ZSCAN18Q8TBC5 510 aaPredicted RBP21.63■■□□□ 1.05
VPS28-205ENST00000526204 RNF34Q969K3 372 aa21.63■■□□□ 1.05
VPS28-205ENST00000526204 CAB39LQ9H9S4 337 aa21.63■■□□□ 1.05
VPS28-205ENST00000526204 IARS2Q9NSE4 1012 aaKnown RBP21.63■■□□□ 1.05
VPS28-205ENST00000526204 NDE1Q9NXR1 346 aa21.63■■□□□ 1.05
VPS28-205ENST00000526204 TLK1Q9UKI8 766 aa21.63■■□□□ 1.05
VPS28-205ENST00000526204 TRPV2Q9Y5S1 764 aa21.63■■□□□ 1.05
VPS28-205ENST00000526204 MEI4A8MW99 385 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 CACNG3O60359 315 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 PAX7P23759 505 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 DNAJB1P25685 340 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 ACTRT2Q8TDY3 377 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 TSNARE1Q96NA8 513 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 GPR22Q99680 433 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 APOL2Q9BQE5 337 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 LBHD1Q9BQE6 289 aaPredicted RBP21.62■■□□□ 1.05
VPS28-205ENST00000526204 VCXQ9H320 206 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 ARL5CA6NH57 179 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 ODC1P11926 461 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 CCNCP24863 283 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 GMPRP36959 345 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 HK2P52789 917 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 IRF9Q00978 393 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 DLG2Q15700 870 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 VWA5B1Q5TIE3 1220 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 BEND5Q7L4P6 421 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 ADGRG6Q86SQ4 1221 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 POU5F2Q8N7G0 328 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 C3orf58Q8NDZ4 430 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 OXSMQ9NWU1 459 aa21.62■■□□□ 1.05
VPS28-205ENST00000526204 TPH1P17752 444 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 BTKQ06187 659 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 NAPRTQ6XQN6 538 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 TAC4Q86UU9 113 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 ZNF781Q8N8C0 355 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 MYLPFQ96A32 169 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 ACBD6Q9BR61 282 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 ILKAPQ9H0C8 392 aaPredicted RBP21.61■■□□□ 1.05
VPS28-205ENST00000526204 RHOJQ9H4E5 214 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 MIOSQ9NXC5 875 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 SNX10Q9Y5X0 201 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.61■■□□□ 1.05
VPS28-205ENST00000526204 NMBRP28336 390 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 HTR7P34969 479 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 CSRP3P50461 194 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 AFF1P51825 1210 aaKnown RBP21.61■■□□□ 1.05
VPS28-205ENST00000526204 CCL14Q16627 93 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 UPP1Q16831 310 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 UGP2Q16851 508 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 PGM2L1Q6PCE3 622 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 CTU1Q7Z7A3 348 aaKnown RBP21.61■■□□□ 1.05
VPS28-205ENST00000526204 METTL23Q86XA0 190 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 C2orf69Q8N8R5 385 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 JADE3Q92613 823 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 CELF6Q96J87 481 aaKnown RBP21.61■■□□□ 1.05
VPS28-205ENST00000526204 PPP1R2P1Q96PQ5 205 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 UBP1Q9NZI7 540 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 SLC39A10Q9ULF5 831 aa21.61■■□□□ 1.05
VPS28-205ENST00000526204 MAGED2Q9UNF1 606 aaPredicted RBP21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms