RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CNPY2Q9Y2B0 182 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 BTBD3Q9Y2F9 522 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANGPTL3Q9Y5C1 460 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PCDHGB5Q9Y5G0 923 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PCDHA3Q9Y5H8 950 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PCDHA13Q9Y5I0 950 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PCDHA1Q9Y5I3 950 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TNFRSF18Q9Y5U5 241 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PSAT1Q9Y617 370 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 HS3ST4Q9Y661 456 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CDY2AQ9Y6F7 541 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PIAS3Q9Y6X2 628 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 AOX1Q06278 1338 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SPATA31A3Q5VYP0 1347 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MYBBP1AQ9BQG0 1328 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SALL3Q9BXA9 1300 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF644Q9H582 1327 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 KDM3AQ9Y4C1 1321 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PIK3R4Q99570 1358 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 LOC100509620A0A075B734 347 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A087WWL8 130 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A087WZ62 844 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CYP2D7A0A087X1C5 515 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRAMEF33A0A0G2JMD5 474 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PNMA6EA0A0J9YXQ4 647 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A0U1RQK1 487 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CENPVL1A0A0U1RR11 272 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RNF103-CHMP3A0A140T963 221 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 LOC102723971A0A1B0GUV8 181 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 hCG_1809904A0A1W2PP81 198 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A1W2PPE2 198 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A1W2PQ09 198 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A1W2PR48 441 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A1W2PR64 198 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A1W2PS29 197 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TCRBV21S2A2A0A5A6 115 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CLRN2A0PK11 232 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF320A2RRD8 509 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 WDR91A4D1P6 747 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DPPA5A6NC42 116 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 C2orf78A6NCI8 922 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRT87PA6NCN2 255 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM90A18PA6NE21 464 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM90A16PA6NEW6 464 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OR2W5A6NFC9 320 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DNAJC9-AS1A6NH13 148 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SERINC4A6NH21 518 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GLOD5A6NK44 160 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 LIPT2A6NK58 231 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 LINC01548A6NM66 108 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 C2orf81A6NN90 581 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DRGXA6NNA5 263 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM90A9PA6NNJ1 464 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC169A6NNP5 214 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 C16orf96A6NNT2 1141 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 A8MVJ9 347 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM90A5PA8MXJ8 464 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CDRT15L2A8MXV6 281 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TTC34A8MYJ7 566 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TARM1B6A8C7 271 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TEX22C9J3V5 150 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRSS44E7EML9 344 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM86B1E9PN63 330 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 POC1B-GALNT4F8VUJ3 575 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 H3BNX3 289 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 STX16-NPEPL1H3BU86 382 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RNF103O00237 685 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 F2RL2O00254 374 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MATN2O00339 956 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 O00370 1275 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DNM1LO00429 736 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 STX16O14662 325 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TNPO2O14787 897 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 IFIT3O14879 490 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF263O14978 683 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MCF2LO15068 1137 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SCAMP1O15126 338 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GRM6O15303 877 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TP73O15350 636 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 BCAT2O15382 392 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRPF4O43172 522 aaKnown RBP eCLIP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 KLK10O43240 276 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZBTB43O43298 467 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADCY6O43306 1168 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HNRNPRO43390 633 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCNAB3O43448 404 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADAM20O43506 726 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DNPH1O43598 174 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 KIF5CO60282 957 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCNT2O60583 730 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRAMEF10O60809 474 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HNRNPCL1O60812 293 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TSC22D2O75157 780 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RTN2O75298 545 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ENTPD3O75355 529 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPR32O75388 356 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MOSPD3O75425 235 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ITGA10O75578 1167 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PALMO75781 387 aa0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms