RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 NR2E1Q9Y466 385 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 TTLL13PA6NNM8 815 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 COQ9O75208 318 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 H2AFYO75367 372 aaKnown RBP13.36□□□□□ -0.27
TCOF1-213ENST00000514442 RPL26P61254 145 aaKnown RBP13.36□□□□□ -0.27
TCOF1-213ENST00000514442 PRUNE1Q86TP1 453 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 SHC3Q92529 594 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 GLMNQ92990 594 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 OSBPL11Q9BXB4 747 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 ATXN3LQ9H3M9 355 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 CLK4Q9HAZ1 481 aaKnown RBP13.36□□□□□ -0.27
TCOF1-213ENST00000514442 TEKT2Q9UIF3 430 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 RUVBL2Q9Y230 463 aaKnown RBP13.36□□□□□ -0.27
TCOF1-213ENST00000514442 FSCN2O14926 492 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 ZC3H12AQ5D1E8 599 aaKnown RBP13.36□□□□□ -0.27
TCOF1-213ENST00000514442 FBXW8Q8N3Y1 598 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 ADCY4Q8NFM4 1077 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 SEMA4DQ92854 862 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 TMEM39AQ9NV64 488 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 PLK2Q9NYY3 685 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 C2orf81A6NN90 581 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 PTPN1P18031 435 aaKnown RBP13.36□□□□□ -0.27
TCOF1-213ENST00000514442 EPHB3P54753 998 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 MRPS6P82932 125 aaKnown RBP13.36□□□□□ -0.27
TCOF1-213ENST00000514442 BTG3Q14201 252 aaPredicted RBP13.36□□□□□ -0.27
TCOF1-213ENST00000514442 NPY5RQ15761 445 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 ZACNQ401N2 412 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 LRRN4Q8WUT4 740 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 HTR3CQ8WXA8 447 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 HSPBAP1Q96EW2 488 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 CAMKK2Q96RR4 588 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 TBCBQ99426 244 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 GPR20Q99678 358 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 SYT17Q9BSW7 474 aa13.36□□□□□ -0.27
TCOF1-213ENST00000514442 RBMX2Q9Y388 322 aaKnown RBP13.36□□□□□ -0.27
TCOF1-213ENST00000514442 WDR27A2RRH5 827 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 PRR5-ARHGAP8B1AHC4 643 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 BTBD19C9JJ37 291 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 CNTFP26441 200 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 ACADVLP49748 655 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 RGS4P49798 205 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 ARHGAP8P85298 464 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 BST1Q10588 318 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 POLD3Q15054 466 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-213ENST00000514442 FAM83EQ2M2I3 478 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 NADK2Q4G0N4 442 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 KCNT2Q6UVM3 1135 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 ZDHHC17Q8IUH5 632 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 C12orf29Q8N999 325 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 OMA1Q96E52 524 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 FOPNLQ96NB1 174 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 VANGL2Q9ULK5 521 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 RBL1P28749 1068 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 ARHGDIAP52565 204 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 RHOAP61586 193 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 LLGL2Q6P1M3 1020 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 LBX2Q6XYB7 198 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 PTAR1Q7Z6K3 402 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-213ENST00000514442 ERI1Q8IV48 349 aaKnown RBP13.35□□□□□ -0.27
TCOF1-213ENST00000514442 SENP6Q9GZR1 1112 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-213ENST00000514442 TKTL2Q9H0I9 626 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 SPATA7Q9P0W8 599 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 SLC17A7Q9P2U7 560 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 IGLV3-22A0A075B6J6 115 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 DCXO43602 365 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 TPST1O60507 370 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 ACTR3P61158 418 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 FNIP1Q8TF40 1166 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 DIS3LQ8TF46 1054 aaKnown RBP13.35□□□□□ -0.27
TCOF1-213ENST00000514442 CLEC4DQ8WXI8 215 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 TCF7L2Q9NQB0 619 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 CACNA1FO60840 1977 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 USP12O75317 370 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 SUPT7LO94864 414 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 LTFP02788 710 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 TFE3P19532 575 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-213ENST00000514442 CD52P31358 61 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 MAPK10P53779 464 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 MRNIPQ6NTE8 343 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 ZCCHC23Q6ZST2 131 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-213ENST00000514442 TRMT6Q9UJA5 497 aaKnown RBP13.35□□□□□ -0.27
TCOF1-213ENST00000514442 ROBO1Q9Y6N7 1651 aa13.35□□□□□ -0.27
TCOF1-213ENST00000514442 RNF103O00237 685 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 SCAMP3O14828 347 aaKnown RBP13.34□□□□□ -0.27
TCOF1-213ENST00000514442 CLOCKO15516 846 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 CYP1A2P05177 515 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 YBX3P16989 372 aaKnown RBP eCLIP13.34□□□□□ -0.27
TCOF1-213ENST00000514442 ARF4P18085 180 aaPredicted RBP13.34□□□□□ -0.27
TCOF1-213ENST00000514442 KDELR1P24390 212 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 MGAT1P26572 445 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 RPL7AP62424 266 aaKnown RBP13.34□□□□□ -0.27
TCOF1-213ENST00000514442 WASHC5Q12768 1159 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 ELAVL2Q12926 359 aaKnown RBP13.34□□□□□ -0.27
TCOF1-213ENST00000514442 MAPK11Q15759 364 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 PERM1Q5SV97 790 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 SMYD1Q8NB12 490 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 POPDC2Q9HBU9 364 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 TRPC5OSA6NMA1 111 aa13.34□□□□□ -0.27
TCOF1-213ENST00000514442 TCEA3O75764 348 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms