RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 MOSPD3O75425 235 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 SASH3O75995 380 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 TCF3P15923 654 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 HOXB8P17481 243 aaPredicted RBP16.34■□□□□ 0.21
NUP54-214ENST00000514307 CES1P23141 567 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 PHBP35232 272 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 CCR2P41597 374 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 RPS24P62847 133 aaKnown RBP16.34■□□□□ 0.21
NUP54-214ENST00000514307 PDIA2Q13087 525 aaKnown RBP16.34■□□□□ 0.21
NUP54-214ENST00000514307 RFTN1Q14699 578 aaPredicted RBP16.34■□□□□ 0.21
NUP54-214ENST00000514307 IL31Q6EBC2 164 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 LINC00523Q86TU6 105 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 TDRD5Q8NAT2 981 aaKnown RBP16.34■□□□□ 0.21
NUP54-214ENST00000514307 VN1R2Q8NFZ6 395 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 GDPD5Q8WTR4 605 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 DDI1Q8WTU0 396 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 OTUB2Q96DC9 234 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 TCEAL4Q96EI5 215 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 SPON2Q9BUD6 331 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 ROPN1BQ9BZX4 212 aaPredicted RBP16.34■□□□□ 0.21
NUP54-214ENST00000514307 GBA3Q9H227 469 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 KIF9Q9HAQ2 790 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 ROPN1Q9HAT0 212 aaPredicted RBP16.34■□□□□ 0.21
NUP54-214ENST00000514307 GLOD4Q9HC38 313 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 ZNF212Q9UDV6 495 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 PLAAQ9Y263 795 aa16.34■□□□□ 0.21
NUP54-214ENST00000514307 GOLGA8MH3BSY2 632 aa16.33■□□□□ 0.2
NUP54-214ENST00000514307 TRDMT1O14717 391 aaKnown RBP16.33■□□□□ 0.2
NUP54-214ENST00000514307 RIPK2O43353 540 aa16.33■□□□□ 0.2
NUP54-214ENST00000514307 NRLP54845 237 aa16.33■□□□□ 0.2
NUP54-214ENST00000514307 GEMP55040 296 aa16.33■□□□□ 0.2
NUP54-214ENST00000514307 FAM193AP78312 1265 aa16.33■□□□□ 0.2
NUP54-214ENST00000514307 SLC29A2Q14542 456 aa16.33■□□□□ 0.2
NUP54-214ENST00000514307 KYNUQ16719 465 aa16.33■□□□□ 0.2
NUP54-214ENST00000514307 HABP4Q5JVS0 413 aaKnown RBP16.33■□□□□ 0.2
NUP54-214ENST00000514307 ANKRD22Q5VYY1 191 aa16.33■□□□□ 0.2
NUP54-214ENST00000514307 TMC5Q6UXY8 1006 aa16.33■□□□□ 0.2
NUP54-214ENST00000514307 CCNJLQ8IV13 435 aa16.33■□□□□ 0.2
NUP54-214ENST00000514307 CELF5Q8N6W0 485 aaKnown RBP16.33■□□□□ 0.2
NUP54-214ENST00000514307 EFHBQ8N7U6 833 aa16.33■□□□□ 0.2
NUP54-214ENST00000514307 TTC16Q8NEE8 873 aa16.33■□□□□ 0.2
NUP54-214ENST00000514307 WBP2Q969T9 261 aa16.33■□□□□ 0.2
NUP54-214ENST00000514307 FCRL5Q96RD9 977 aa16.33■□□□□ 0.2
NUP54-214ENST00000514307 KIAA1671Q9BY89 1806 aa16.33■□□□□ 0.2
NUP54-214ENST00000514307 MAGEB16A2A368 324 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 SDR42E2A6NKP2 422 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 E7ESA3 106 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 CACNG3O60359 315 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 PRAMEF11O60813 436 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 GSTA2P09210 222 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 NUDT17P0C025 328 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 FSHRP23945 695 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 NPY2RP49146 381 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 IRAK1P51617 712 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 TNK2Q07912 1038 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 SLC12A1Q13621 1099 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 KCNC3Q14003 757 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 BBS9Q3SYG4 887 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 CCDC38Q502W7 563 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 RNF219Q5W0B1 726 aaPredicted RBP16.32■□□□□ 0.2
NUP54-214ENST00000514307 LRRC8BQ6P9F7 803 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 GPR149Q86SP6 731 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 ZBED8Q8IZ13 594 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 CARNMT1Q8N4J0 409 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 TEX26Q8N6G2 289 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 C12orf76Q8N812 135 aaPredicted RBP16.32■□□□□ 0.2
NUP54-214ENST00000514307 PDCD7Q8N8D1 485 aaKnown RBP16.32■□□□□ 0.2
NUP54-214ENST00000514307 ZSCAN18Q8TBC5 510 aaPredicted RBP16.32■□□□□ 0.2
NUP54-214ENST00000514307 DEPDC1BQ8WUY9 529 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 USP13Q92995 863 aaPredicted RBP16.32■□□□□ 0.2
NUP54-214ENST00000514307 ZIM3Q96PE6 472 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 NAT9Q9BTE0 207 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 MUC3BQ9H195 1237 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 CDC42EP4Q9H3Q1 356 aaKnown RBP16.32■□□□□ 0.2
NUP54-214ENST00000514307 LRRC40Q9H9A6 602 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 FAM53CQ9NYF3 392 aa16.32■□□□□ 0.2
NUP54-214ENST00000514307 KIAA1522Q9P206 1035 aaPredicted RBP16.32■□□□□ 0.2
NUP54-214ENST00000514307 A0A087WUV0 522 aaPredicted RBP16.31■□□□□ 0.2
NUP54-214ENST00000514307 TCRBV7S3A2A0A539 114 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 GOLGA8KD6RF30 607 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 J3KR12 359 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 GFRA2O00451 464 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 SPAG6O75602 509 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 SUN1O94901 812 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 LUC7L3O95232 432 aaKnown RBP16.31■□□□□ 0.2
NUP54-214ENST00000514307 AP2A1O95782 977 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 ABHD2P08910 425 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 MYZAPP0CAP1 466 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 PSMB4P28070 264 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 MMP13P45452 471 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 GEMIN4P57678 1058 aaKnown RBP16.31■□□□□ 0.2
NUP54-214ENST00000514307 NTHL1P78549 312 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 ZXDBP98169 803 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 ITKQ08881 620 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 LBRQ14739 615 aaKnown RBP16.31■□□□□ 0.2
NUP54-214ENST00000514307 STAT4Q14765 748 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 UAP1Q16222 522 aaPredicted RBP16.31■□□□□ 0.2
NUP54-214ENST00000514307 ATAT1Q5SQI0 421 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 FNBP1LQ5T0N5 605 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 STXBP5Q5T5C0 1151 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms