RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 APOEP02649 317 aa20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 GP1BAP07359 652 aa20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 ALPPL2P10696 532 aa20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 TGM2P21980 687 aa20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 RBMS1P29558 406 aaKnown RBP20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 SULT2A1Q06520 285 aa20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 NNTQ13423 1086 aa20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 SLC12A1Q13621 1099 aa20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 DLG2Q15700 870 aa20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 ISXQ2M1V0 245 aa20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 EDRF1Q3B7T1 1238 aa20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 ATXN7L3BQ96GX2 97 aa20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 HSFY1Q96LI6 401 aa20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 PREBQ9HCU5 417 aa20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 NLGN3Q9NZ94 848 aa20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 CFAP45Q9UL16 551 aa20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 HPSEQ9Y251 543 aa20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 SSUH2Q9Y2M2 353 aa20.9■□□□□ 0.94
SQSTM1-215ENST00000514093 F5H5T6 163 aa20.89■□□□□ 0.93
SQSTM1-215ENST00000514093 K7ENP7 123 aa20.89■□□□□ 0.93
SQSTM1-215ENST00000514093 K7ESM1 405 aa20.89■□□□□ 0.93
SQSTM1-215ENST00000514093 MCF2LO15068 1137 aa20.89■□□□□ 0.93
SQSTM1-215ENST00000514093 PAEPP09466 180 aa20.89■□□□□ 0.93
SQSTM1-215ENST00000514093 CMA1P23946 247 aa20.89■□□□□ 0.93
SQSTM1-215ENST00000514093 PIP5KL1Q5T9C9 394 aa20.89■□□□□ 0.93
SQSTM1-215ENST00000514093 CXorf57Q6NSI4 855 aaKnown RBP20.89■□□□□ 0.93
SQSTM1-215ENST00000514093 INO80CQ6PI98 192 aaPredicted RBP20.89■□□□□ 0.93
SQSTM1-215ENST00000514093 FOXR1Q6PIV2 292 aa20.89■□□□□ 0.93
SQSTM1-215ENST00000514093 SLC22A18ASQ8N1D0 253 aa20.89■□□□□ 0.93
SQSTM1-215ENST00000514093 SLC46A1Q96NT5 459 aa20.89■□□□□ 0.93
SQSTM1-215ENST00000514093 TRIM4Q9C037 500 aa20.89■□□□□ 0.93
SQSTM1-215ENST00000514093 ST7Q9NRC1 585 aa20.89■□□□□ 0.93
SQSTM1-215ENST00000514093 WDR70Q9NW82 654 aa20.89■□□□□ 0.93
SQSTM1-215ENST00000514093 DNAJC28Q9NX36 388 aa20.89■□□□□ 0.93
SQSTM1-215ENST00000514093 SLC25A13Q9UJS0 675 aa20.89■□□□□ 0.93
SQSTM1-215ENST00000514093 CPED1A4D0V7 1026 aa20.88■□□□□ 0.93
SQSTM1-215ENST00000514093 SCAMP1O15126 338 aa20.88■□□□□ 0.93
SQSTM1-215ENST00000514093 ATP9BO43861 1147 aa20.88■□□□□ 0.93
SQSTM1-215ENST00000514093 TBXAS1P24557 533 aaPredicted RBP20.88■□□□□ 0.93
SQSTM1-215ENST00000514093 DUSP3P51452 185 aaPredicted RBP20.88■□□□□ 0.93
SQSTM1-215ENST00000514093 PLK1P53350 603 aa20.88■□□□□ 0.93
SQSTM1-215ENST00000514093 PITX1P78337 314 aaPredicted RBP20.88■□□□□ 0.93
SQSTM1-215ENST00000514093 PKP1Q13835 747 aa20.88■□□□□ 0.93
SQSTM1-215ENST00000514093 CDKN3Q16667 212 aa20.88■□□□□ 0.93
SQSTM1-215ENST00000514093 ZNF284Q2VY69 593 aa20.88■□□□□ 0.93
SQSTM1-215ENST00000514093 OR6B2Q6IFH4 312 aa20.88■□□□□ 0.93
SQSTM1-215ENST00000514093 CRTC1Q6UUV9 634 aa20.88■□□□□ 0.93
SQSTM1-215ENST00000514093 GCNT7Q6ZNI0 430 aa20.88■□□□□ 0.93
SQSTM1-215ENST00000514093 OR52K2Q8NGK3 314 aa20.88■□□□□ 0.93
SQSTM1-215ENST00000514093 KAT5Q92993 513 aa20.88■□□□□ 0.93
SQSTM1-215ENST00000514093 ALG14Q96F25 216 aa20.88■□□□□ 0.93
SQSTM1-215ENST00000514093 BTN2A3PQ96KV6 586 aa20.88■□□□□ 0.93
SQSTM1-215ENST00000514093 NEMP2A6NFY4 417 aa20.87■□□□□ 0.93
SQSTM1-215ENST00000514093 RNF103O00237 685 aa20.87■□□□□ 0.93
SQSTM1-215ENST00000514093 CTSLP07711 333 aa20.87■□□□□ 0.93
SQSTM1-215ENST00000514093 AKT2P31751 481 aa20.87■□□□□ 0.93
SQSTM1-215ENST00000514093 SYKP43405 635 aa20.87■□□□□ 0.93
SQSTM1-215ENST00000514093 NDUFA8P51970 172 aa20.87■□□□□ 0.93
SQSTM1-215ENST00000514093 ATL3Q6DD88 541 aa20.87■□□□□ 0.93
SQSTM1-215ENST00000514093 CCDC81Q6ZN84 652 aa20.87■□□□□ 0.93
SQSTM1-215ENST00000514093 Q6ZSR6 202 aa20.87■□□□□ 0.93
SQSTM1-215ENST00000514093 HORMAD1Q86X24 394 aa20.87■□□□□ 0.93
SQSTM1-215ENST00000514093 ERCC4Q92889 916 aaPredicted RBP20.87■□□□□ 0.93
SQSTM1-215ENST00000514093 ARRDC3Q96B67 414 aa20.87■□□□□ 0.93
SQSTM1-215ENST00000514093 PRR11Q96HE9 360 aaPredicted RBP20.87■□□□□ 0.93
SQSTM1-215ENST00000514093 PRMT1Q99873 361 aaKnown RBP20.87■□□□□ 0.93
SQSTM1-215ENST00000514093 ENTPD2Q9Y5L3 495 aa20.87■□□□□ 0.93
SQSTM1-215ENST00000514093 KCNU1A8MYU2 1149 aa20.86■□□□□ 0.93
SQSTM1-215ENST00000514093 CASC3O15234 703 aaKnown RBP20.86■□□□□ 0.93
SQSTM1-215ENST00000514093 TRUB2O95900 331 aaKnown RBP20.86■□□□□ 0.93
SQSTM1-215ENST00000514093 HNRNPA2B1P22626 353 aaKnown RBP20.86■□□□□ 0.93
SQSTM1-215ENST00000514093 SKOR1P84550 965 aa20.86■□□□□ 0.93
SQSTM1-215ENST00000514093 CENPCQ03188 943 aa20.86■□□□□ 0.93
SQSTM1-215ENST00000514093 NFATC3Q12968 1075 aa20.86■□□□□ 0.93
SQSTM1-215ENST00000514093 ZSCAN23Q3MJ62 389 aa20.86■□□□□ 0.93
SQSTM1-215ENST00000514093 SEL1L3Q68CR1 1132 aa20.86■□□□□ 0.93
SQSTM1-215ENST00000514093 GUSBP11Q6P575 273 aa20.86■□□□□ 0.93
SQSTM1-215ENST00000514093 EXD3Q8N9H8 876 aa20.86■□□□□ 0.93
SQSTM1-215ENST00000514093 FEM1AQ9BSK4 669 aa20.86■□□□□ 0.93
SQSTM1-215ENST00000514093 DUSP23Q9BVJ7 150 aa20.86■□□□□ 0.93
SQSTM1-215ENST00000514093 ZFR2Q9UPR6 939 aaKnown RBP20.86■□□□□ 0.93
SQSTM1-215ENST00000514093 SPTA1P02549 2419 aa20.85■□□□□ 0.93
SQSTM1-215ENST00000514093 SYNJ2BP-COX16A0A087WUM0 186 aa20.85■□□□□ 0.93
SQSTM1-215ENST00000514093 TCAF2A6NFQ2 919 aa20.85■□□□□ 0.93
SQSTM1-215ENST00000514093 KPNA3O00505 521 aaPredicted RBP20.85■□□□□ 0.93
SQSTM1-215ENST00000514093 ALOX15BO15296 676 aa20.85■□□□□ 0.93
SQSTM1-215ENST00000514093 PCDH8O95206 1070 aa20.85■□□□□ 0.93
SQSTM1-215ENST00000514093 IRAK1P51617 712 aa20.85■□□□□ 0.93
SQSTM1-215ENST00000514093 FBXL22Q6P050 247 aa20.85■□□□□ 0.93
SQSTM1-215ENST00000514093 IGF2-ASQ6U949 168 aa20.85■□□□□ 0.93
SQSTM1-215ENST00000514093 EFL1Q7Z2Z2 1120 aaKnown RBP20.85■□□□□ 0.93
SQSTM1-215ENST00000514093 SH2D3CQ8N5H7 860 aa20.85■□□□□ 0.93
SQSTM1-215ENST00000514093 ATP6V0D2Q8N8Y2 350 aa20.85■□□□□ 0.93
SQSTM1-215ENST00000514093 USP29Q9HBJ7 922 aa20.85■□□□□ 0.93
SQSTM1-215ENST00000514093 COX16Q9P0S2 106 aa20.85■□□□□ 0.93
SQSTM1-215ENST00000514093 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 MT-CO1P00395 513 aa20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 IGLV3-25P01717 112 aa20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 GPD2P43304 727 aa20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 CSRP3P50461 194 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms