RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 ATP9BO43861 1147 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 MOCS2O96007 188 aaPredicted RBP11.26□□□□□ -0.61
DDX41-216ENST00000513562 AFPP02771 609 aaKnown RBP11.26□□□□□ -0.61
DDX41-216ENST00000513562 FYNP06241 537 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 NEFLP07196 543 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 VDRP11473 427 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 CD19P15391 556 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 PDGFRAP16234 1089 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 PSMC2P35998 433 aaKnown RBP11.26□□□□□ -0.61
DDX41-216ENST00000513562 NUMBP49757 651 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 MXI1P50539 228 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 CDKN3Q16667 212 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 ZNF542PQ5EBM4 170 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 FOXR1Q6PIV2 292 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 EFL1Q7Z2Z2 1120 aaKnown RBP11.26□□□□□ -0.61
DDX41-216ENST00000513562 HORMAD1Q86X24 394 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 LGI2Q8N0V4 545 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 FAM174AQ8TBP5 190 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 CLEC4CQ8WTT0 213 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 SLC35F5Q8WV83 523 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 KLK6Q92876 244 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 ARRDC3Q96B67 414 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 SGF29Q96ES7 293 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 DNAJC28Q9NX36 388 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.26□□□□□ -0.61
DDX41-216ENST00000513562 CSNK1G3Q9Y6M4 447 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 TEX15Q9BXT5 2789 aa11.26□□□□□ -0.61
DDX41-216ENST00000513562 CCDC187A0A096LP49 1063 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 CPED1A4D0V7 1026 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 EME2A4GXA9 379 aaPredicted RBP11.25□□□□□ -0.61
DDX41-216ENST00000513562 A6NNZ2 444 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 PIK3R2O00459 728 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 GJB6O95452 261 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 CENPBP07199 599 aaPredicted RBP11.25□□□□□ -0.61
DDX41-216ENST00000513562 SFTPCP11686 197 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 NME1P15531 152 aaKnown RBP11.25□□□□□ -0.61
DDX41-216ENST00000513562 TACR2P21452 398 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 RGS7P49802 495 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 PLK1P53350 603 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 CLDN2P57739 230 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 CUL2Q13617 745 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 FZD2Q14332 565 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 RESP18Q5W5W9 173 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 RAP1GAP2Q684P5 730 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 PMF1Q6P1K2 205 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 LCLAT1Q6UWP7 414 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 Q6ZSR6 202 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 Q6ZVU0 165 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 USP53Q70EK8 1073 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 CHSY1Q86X52 802 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 DCP2Q8IU60 420 aaKnown RBP11.25□□□□□ -0.61
DDX41-216ENST00000513562 CEP57L1Q8IYX8 460 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 ERCC4Q92889 916 aaPredicted RBP11.25□□□□□ -0.61
DDX41-216ENST00000513562 EXTL1Q92935 676 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 PAGE5Q96GU1 130 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 ZNF396Q96N95 335 aaPredicted RBP11.25□□□□□ -0.61
DDX41-216ENST00000513562 SEMA3CQ99985 751 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 ARHGAP9Q9BRR9 750 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 FAM13BQ9NYF5 915 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 SALL4Q9UJQ4 1053 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 KIAA1257Q9ULG3 409 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 PCDHGA7Q9Y5G6 932 aa11.25□□□□□ -0.61
DDX41-216ENST00000513562 COL27A1Q8IZC6 1860 aaPredicted RBP11.25□□□□□ -0.61
DDX41-216ENST00000513562 ACTN4O43707 911 aaKnown RBP11.24□□□□□ -0.61
DDX41-216ENST00000513562 NOBOXO60393 691 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 FBXO21O94952 628 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 APOEP02649 317 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 CSF2P04141 144 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 CTSLP07711 333 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 FAM87AP0C7U9 286 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 GP1BBP13224 206 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 INHBCP55103 352 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 OXCT1P55809 520 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 NR0B2Q15466 257 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 DLG2Q15700 870 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 ACCSLQ4AC99 568 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 TMEM259Q4ZIN3 620 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 PERM1Q5SV97 790 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 OR6B2Q6IFH4 312 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 CXorf57Q6NSI4 855 aaKnown RBP11.24□□□□□ -0.61
DDX41-216ENST00000513562 CRTC1Q6UUV9 634 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 KYAT3Q6YP21 454 aaKnown RBP11.24□□□□□ -0.61
DDX41-216ENST00000513562 PTAR1Q7Z6K3 402 aaPredicted RBP11.24□□□□□ -0.61
DDX41-216ENST00000513562 TAC4Q86UU9 113 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 PARGQ86W56 976 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 CIR1Q86X95 450 aaPredicted RBP11.24□□□□□ -0.61
DDX41-216ENST00000513562 CCAR2Q8N163 923 aaKnown RBP11.24□□□□□ -0.61
DDX41-216ENST00000513562 UBR7Q8N806 425 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 WDR48Q8TAF3 677 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 ALG14Q96F25 216 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 BTN2A3PQ96KV6 586 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 BMFQ96LC9 184 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 HSFY1Q96LI6 401 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 SERTAD1Q9UHV2 236 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 SLC25A13Q9UJS0 675 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 ACSL6Q9UKU0 697 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 ZFR2Q9UPR6 939 aaKnown RBP11.24□□□□□ -0.61
DDX41-216ENST00000513562 NAALADL1Q9UQQ1 740 aa11.24□□□□□ -0.61
DDX41-216ENST00000513562 FLNCQ14315 2725 aa11.23□□□□□ -0.61
DDX41-216ENST00000513562 SPTY2D1-AS1A0A0U1RR47 76 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms