RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CHRNDQ07001 517 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 LMO3Q8TAP4 145 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 NT5C1BQ96P26 610 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 TTYH2Q9BSA4 534 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 IDI2Q9BXS1 227 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 TOR3AQ9H497 397 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 AKIP1Q9NQ31 210 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 ACSS2Q9NR19 701 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 TRMT112Q9UI30 125 aaKnown RBP12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 SLCO3A1Q9UIG8 710 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 CHD1O14646 1710 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 E7ENX8 843 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 H0Y858 1186 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 ACSL4O60488 711 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 HTR2BP41595 481 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 OR3A3P47888 321 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 LEPRP48357 1165 aaKnown RBP12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 GRSF1Q12849 480 aaKnown RBP eCLIP12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 MMRN1Q13201 1228 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 ZFP69Q49AA0 526 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 HMBOX1Q6NT76 420 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 ABRAXAS1Q6UWZ7 409 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 SLC44A5Q8NCS7 719 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 HDAC11Q96DB2 347 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 MKRN2Q9H000 416 aaKnown RBP12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 PCDH9Q9HC56 1237 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 COPG2Q9UBF2 871 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 ATPIF1Q9UII2 106 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 SPATA31A1Q5TZJ5 1347 aa12.26□□□□□ -0.45
LIMCH1-213ENST00000511496 ATP6V1G2-DDX39BF2Z307 99 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 ACOT8O14734 319 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 TBX1O43435 398 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 PROSCO94903 275 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 VAPBO95292 243 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 CD4P01730 458 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 CAPNS1P04632 268 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 M6PRP20645 277 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 PPP3CAQ08209 521 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 HSPA14Q0VDF9 509 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 SPATC1Q76KD6 591 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 PCGF5Q86SE9 256 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 LRRC47Q8N1G4 583 aaKnown RBP12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 FAM71DQ8N9W8 422 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 ACAT2Q9BWD1 397 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 VRTNQ9H8Y1 702 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 IFT80Q9P2H3 777 aaPredicted RBP12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 ATAD5Q96QE3 1844 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 M0R3G1 203 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 MYL4P12829 197 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 SPNP16150 400 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 MYF6P23409 242 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 RPL22P35268 128 aaKnown RBP12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 GRIA1P42261 906 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 LAMC2Q13753 1193 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 N4BP2L1Q5TBK1 243 aaPredicted RBP12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 DESI1Q6ICB0 168 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 ARCQ7LC44 396 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 ADCK1Q86TW2 530 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 C10orf107Q8IVU9 208 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 ADGRF2Q8IZF7 708 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 SPARTQ8N0X7 666 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 SNX31Q8N9S9 440 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 GIMAP1Q8WWP7 306 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 S100ZQ8WXG8 99 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 NGLY1Q96IV0 654 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 ADNPQ9H2P0 1102 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 FARP1Q9Y4F1 1045 aaPredicted RBP12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 PMF1-BGLAPU3KQ54 211 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 TRIM64BA6NI03 449 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 PDZK1P1A8MUH7 402 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 GSTM1P09488 218 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 FGF3P11487 239 aaPredicted RBP12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 GYG1P46976 350 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 CDK10Q15131 360 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 SLX4IPQ5VYV7 408 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 TMEM236Q5W0B7 351 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 MBLAC2Q68D91 279 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 TCAIMQ8N3R3 496 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 NAT8LQ8N9F0 302 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 MAPK15Q8TD08 544 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 RASSF5Q8WWW0 418 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 PIK3R3Q92569 461 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 LPGAT1Q92604 370 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 KREMEN1Q96MU8 473 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 APBA2Q99767 749 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 C11orf70Q9BRQ4 267 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 UQCC2Q9BRT2 126 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 ZNF341Q9BYN7 854 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 DUOX1Q9NRD9 1551 aa12.25□□□□□ -0.45
LIMCH1-213ENST00000511496 LMO7Q8WWI1 1683 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 FRMPD2Q68DX3 1309 aaPredicted RBP12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 GPC4O75487 556 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 ARRB2P32121 409 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 EPHX2P34913 555 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 INSCQ1MX18 579 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 ANGEL2Q5VTE6 544 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 IDO2Q6ZQW0 420 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 CPNE5Q9HCH3 593 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 TCF7L2Q9NQB0 619 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 CNOT6Q9ULM6 557 aaKnown RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms