RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 F9P00740 461 aa21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 ACP1P24666 158 aa21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 EIF2S3P41091 472 aaKnown RBP21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 CLCN6P51797 869 aa21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 BPIFB4P59827 614 aa21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 NME3Q13232 169 aa21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 ZNF211Q13398 564 aaPredicted RBP21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 AUHQ13825 339 aaKnown RBP21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 FBXL22Q6P050 247 aa21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 FBXL19Q6PCT2 694 aa21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 DCP2Q8IU60 420 aaKnown RBP21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 DEFB106AQ8N104 65 aa21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 LSMEM2Q8N112 164 aa21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 ATP11CQ8NB49 1132 aa21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 FAM131CQ96AQ9 280 aa21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 PRMT1Q99873 361 aaKnown RBP21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 VANGL2Q9ULK5 521 aa21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 PPM1HQ9ULR3 514 aa21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 DSPP15924 2871 aaKnown RBP21.6■■□□□ 1.05
SQSTM1-210ENST00000506042 GOLGA4Q13439 2230 aaKnown RBP21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 KPNA3O00505 521 aaPredicted RBP21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 RHOCP08134 193 aa21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 NOS2P35228 1153 aa21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 PPP2CBP62714 309 aa21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 PPP2CAP67775 309 aa21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 CNTN1Q12860 1018 aa21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 BRMS1LQ5PSV4 323 aa21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 BROXQ5VW32 411 aa21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 OR6B2Q6IFH4 312 aa21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 SH2D3CQ8N5H7 860 aa21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 C1orf131Q8NDD1 294 aaKnown RBP21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 FRS2Q8WU20 508 aa21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 FGF11Q92914 225 aa21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 MYEOVQ96EZ4 313 aa21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 SLC2A13Q96QE2 648 aa21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 USP29Q9HBJ7 922 aa21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 NCKIPSDQ9NZQ3 722 aa21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 APEX2Q9UBZ4 518 aa21.59■■□□□ 1.05
SQSTM1-210ENST00000506042 URB1O60287 2271 aaKnown RBP21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 BNIP3Q12983 259 aa21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 SHBQ15464 509 aa21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 ARHGAP44Q17R89 818 aa21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 CXorf57Q6NSI4 855 aaKnown RBP21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 TRIM65Q6PJ69 517 aa21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 Q6ZVU0 165 aa21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 SETD3Q86TU7 594 aaPredicted RBP21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 CIR1Q86X95 450 aaPredicted RBP21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 MARCH9Q86YJ5 346 aa21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 SNIP1Q8TAD8 396 aaKnown RBP21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 RFFLQ8WZ73 363 aa21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 IFT43Q96FT9 208 aa21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 DUSP23Q9BVJ7 150 aa21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 ABCG4Q9H172 646 aa21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 WDCPQ9H6R7 721 aa21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 PCDHGC3Q9UN70 934 aa21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 HS3ST2Q9Y278 367 aa21.58■■□□□ 1.05
SQSTM1-210ENST00000506042 H3BM21 787 aa21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 M0QYT0 321 aa21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 DAB1O75553 588 aa21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 CALCAP01258 141 aa21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 THEGLP0DJG4 465 aa21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 CD44P16070 742 aaKnown RBP21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 HNRNPA2B1P22626 353 aaKnown RBP21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 UCNP55089 124 aa21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 MORC3Q14149 939 aa21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 TPD52L1Q16890 204 aaPredicted RBP21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 EXOC3L4Q17RC7 722 aa21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 AGBL4Q5VU57 503 aa21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 RETSATQ6NUM9 610 aa21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 TMIEQ8NEW7 156 aa21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 DEPDC7Q96QD5 511 aa21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 SIK2Q9H0K1 926 aa21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 KLHL11Q9NVR0 708 aa21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 TBC1D30Q9Y2I9 924 aa21.57■■□□□ 1.04
SQSTM1-210ENST00000506042 KNL1Q8NG31 2342 aa21.56■■□□□ 1.04
SQSTM1-210ENST00000506042 TEX51A0A1B0GUA7 166 aa21.56■■□□□ 1.04
SQSTM1-210ENST00000506042 GTPBP10A4D1E9 387 aaKnown RBP21.56■■□□□ 1.04
SQSTM1-210ENST00000506042 PPP1R3GB7ZBB8 358 aa21.56■■□□□ 1.04
SQSTM1-210ENST00000506042 PCDH8O95206 1070 aa21.56■■□□□ 1.04
SQSTM1-210ENST00000506042 CHRNA3P32297 505 aa21.56■■□□□ 1.04
SQSTM1-210ENST00000506042 STX17P56962 302 aa21.56■■□□□ 1.04
SQSTM1-210ENST00000506042 SLC26A9Q7LBE3 791 aa21.56■■□□□ 1.04
SQSTM1-210ENST00000506042 HORMAD1Q86X24 394 aa21.56■■□□□ 1.04
SQSTM1-210ENST00000506042 OR4C6Q8NH72 309 aa21.56■■□□□ 1.04
SQSTM1-210ENST00000506042 FCRL3Q96P31 734 aaPredicted RBP21.56■■□□□ 1.04
SQSTM1-210ENST00000506042 CALN1Q9BXU9 219 aa21.56■■□□□ 1.04
SQSTM1-210ENST00000506042 ARHGAP20Q9P2F6 1191 aa21.56■■□□□ 1.04
SQSTM1-210ENST00000506042 FREM2Q5SZK8 3169 aa21.56■■□□□ 1.04
SQSTM1-210ENST00000506042 A6NNZ2 444 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 C10orf142B7Z368 130 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 CBX4O00257 560 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 BIN1O00499 593 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 PAGE1O75459 146 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 VAV1P15498 845 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 ETFBP38117 255 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 HNRNPKP61978 463 aaKnown RBP eCLIP21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 SLC6A3Q01959 620 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 CENPCQ03188 943 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 KCNMA1Q12791 1236 aa21.55■■□□□ 1.04
SQSTM1-210ENST00000506042 EIF4EBP2Q13542 120 aaPredicted RBP21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms