RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 INTUQ9ULD6 942 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 PADI3Q9ULW8 664 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 MTO1Q9Y2Z2 717 aaKnown RBP4.36□□□□□ -1.71
USP54-217ENST00000498213 PCDHGA5Q9Y5G8 931 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 PCDHA1Q9Y5I3 950 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 TNFRSF18Q9Y5U5 241 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 MRFAP1Q9Y605 127 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 KIAA1671Q9BY89 1806 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 MIA3Q5JRA6 1907 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 BAZ2AQ9UIF9 1905 aaKnown RBP4.36□□□□□ -1.71
USP54-217ENST00000498213 MYH4Q9Y623 1939 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 DOCK8Q8NF50 2099 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 A0A1B0GTW7 788 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 TRABD2BA6NFA1 517 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 KLRF2D3W0D1 207 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 DCLK1O15075 740 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 KIAA0391O15091 583 aaKnown RBP4.35□□□□□ -1.71
USP54-217ENST00000498213 XPOTO43592 962 aaKnown RBP4.35□□□□□ -1.71
USP54-217ENST00000498213 MGEA5O60502 916 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 SPDEFO95238 335 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 GGPS1O95749 300 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 GPANK1O95872 356 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 MT-CO1P00395 513 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 LGALS2P05162 132 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 CENPBP07199 599 aaPredicted RBP4.35□□□□□ -1.71
USP54-217ENST00000498213 MYF5P13349 255 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 DDCP20711 480 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 FPR1P21462 350 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 UBA1P22314 1058 aaKnown RBP4.35□□□□□ -1.71
USP54-217ENST00000498213 SLC16A2P36021 539 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 EIF2S3P41091 472 aaKnown RBP4.35□□□□□ -1.71
USP54-217ENST00000498213 ALDH7A1P49419 539 aaKnown RBP4.35□□□□□ -1.71
USP54-217ENST00000498213 CLCN4P51793 760 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 IRX4P78413 519 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 PGM5Q15124 567 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 QRICH1Q2TAL8 776 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 IFIT1BQ5T764 474 aaKnown RBP4.35□□□□□ -1.71
USP54-217ENST00000498213 DPY19L2P1Q6NXN4 242 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 Q6ZS52 159 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 NIPA1Q7RTP0 329 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 WDR5BQ86VZ2 330 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 TMEM173Q86WV6 379 aaPredicted RBP4.35□□□□□ -1.71
USP54-217ENST00000498213 GPR65Q8IYL9 337 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 SLC39A11Q8N1S5 342 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 ENAHQ8N8S7 591 aaPredicted RBP4.35□□□□□ -1.71
USP54-217ENST00000498213 GPR150Q8NGU9 434 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 NRG4Q8WWG1 115 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 SEPT1Q8WYJ6 367 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 PHKBQ93100 1093 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 SPZ1Q9BXG8 430 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 FAM49AQ9H0Q0 323 aaPredicted RBP4.35□□□□□ -1.71
USP54-217ENST00000498213 ZBP1Q9H171 429 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 AZI2Q9H6S1 392 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 JMJD4Q9H9V9 463 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 ATP6V0A4Q9HBG4 840 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 TDP1Q9NUW8 608 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 ATP8A1Q9Y2Q0 1164 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 COL6A6A6NMZ7 2263 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 COL1A2P08123 1366 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 LAMA1P25391 3075 aa4.35□□□□□ -1.71
USP54-217ENST00000498213 FLNCQ14315 2725 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 ZFHX3Q15911 3703 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 SMIM35A0A1B0GVV1 85 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 PIPSLA2A3N6 862 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 BCLAF3A2AJT9 711 aaKnown RBP4.34□□□□□ -1.71
USP54-217ENST00000498213 DHX16O60231 1041 aaKnown RBP4.34□□□□□ -1.71
USP54-217ENST00000498213 NMT2O60551 498 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 CNPP09543 421 aaKnown RBP4.34□□□□□ -1.71
USP54-217ENST00000498213 MYBL2P10244 700 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 FGFR4P22455 802 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 FDXRP22570 491 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 PROZP22891 400 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 PCSK1P29120 753 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 NTHL1P78549 312 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 HSD11B2P80365 405 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 MRPS6P82932 125 aaKnown RBP4.34□□□□□ -1.71
USP54-217ENST00000498213 OCA2Q04671 838 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 ITKQ08881 620 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 USH1GQ495M9 461 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 PLK5Q496M5 336 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 UTP14CQ5TAP6 766 aaKnown RBP4.34□□□□□ -1.71
USP54-217ENST00000498213 SEM1Q6ZVN7 128 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 SLC24A5Q71RS6 500 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 CATIPQ7Z7H3 387 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 PIP4P1Q86T03 277 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 SMC5Q8IY18 1101 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 EXOC8Q8IYI6 725 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 TMEM132CQ8N3T6 1108 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 SPEM1Q8N4L4 309 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 FITM2Q8N6M3 262 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 NLGN4YQ8NFZ3 816 aaPredicted RBP4.34□□□□□ -1.71
USP54-217ENST00000498213 ASB10Q8WXI3 467 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 FAM3CQ92520 227 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 HDAC10Q969S8 669 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 ZNF707Q96C28 371 aaPredicted RBP4.34□□□□□ -1.71
USP54-217ENST00000498213 COQ10AQ96MF6 247 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 CAMK1GQ96NX5 476 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 CASD1Q96PB1 797 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 TAAR1Q96RJ0 339 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 ADAM2Q99965 735 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms