RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 EXTL1Q92935 676 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 IFT43Q96FT9 208 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 SLC39A13Q96H72 371 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 EVA1BQ9NVM1 165 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 HESX1Q9UBX0 185 aa16.96■□□□□ 0.31
VIM-208ENST00000497849 CPED1A4D0V7 1026 aa16.95■□□□□ 0.3
VIM-208ENST00000497849 AFPP02771 609 aaKnown RBP16.95■□□□□ 0.3
VIM-208ENST00000497849 LTFP02788 710 aa16.95■□□□□ 0.3
VIM-208ENST00000497849 MLLT3P42568 568 aaPredicted RBP16.95■□□□□ 0.3
VIM-208ENST00000497849 RGS7P49802 495 aa16.95■□□□□ 0.3
VIM-208ENST00000497849 MCCD1P59942 119 aaPredicted RBP16.95■□□□□ 0.3
VIM-208ENST00000497849 ENPEPQ07075 957 aa16.95■□□□□ 0.3
VIM-208ENST00000497849 SRSF6Q13247 344 aaKnown RBP16.95■□□□□ 0.3
VIM-208ENST00000497849 ZNF284Q2VY69 593 aa16.95■□□□□ 0.3
VIM-208ENST00000497849 PIP5KL1Q5T9C9 394 aa16.95■□□□□ 0.3
VIM-208ENST00000497849 ZCCHC8Q6NZY4 707 aaKnown RBP16.95■□□□□ 0.3
VIM-208ENST00000497849 ABI3BPQ7Z7G0 1075 aa16.95■□□□□ 0.3
VIM-208ENST00000497849 DSG4Q86SJ6 1040 aa16.95■□□□□ 0.3
VIM-208ENST00000497849 LGI2Q8N0V4 545 aa16.95■□□□□ 0.3
VIM-208ENST00000497849 DQX1Q8TE96 717 aaKnown RBP16.95■□□□□ 0.3
VIM-208ENST00000497849 IRGQQ8WZA9 623 aa16.95■□□□□ 0.3
VIM-208ENST00000497849 EEF2KMTQ96G04 330 aa16.95■□□□□ 0.3
VIM-208ENST00000497849 DNAJC28Q9NX36 388 aa16.95■□□□□ 0.3
VIM-208ENST00000497849 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.95■□□□□ 0.3
VIM-208ENST00000497849 SPTAN1Q13813 2472 aaKnown RBP16.94■□□□□ 0.3
VIM-208ENST00000497849 TRPM6Q9BX84 2022 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 EME2A4GXA9 379 aaPredicted RBP16.94■□□□□ 0.3
VIM-208ENST00000497849 O00370 1275 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 MCF2LO15068 1137 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 CALUO43852 315 aaPredicted RBP16.94■□□□□ 0.3
VIM-208ENST00000497849 NOBOXO60393 691 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 MOCS2O96007 188 aaPredicted RBP16.94■□□□□ 0.3
VIM-208ENST00000497849 ITGB2P05107 769 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 FAM87AP0C7U9 286 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 SETSIPP0DME0 302 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 KRT13P13646 458 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 PDGFRAP16234 1089 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 HNRNPA2B1P22626 353 aaKnown RBP16.94■□□□□ 0.3
VIM-208ENST00000497849 NR2F2P24468 414 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 NUCB2P80303 420 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 DNM1Q05193 864 aaKnown RBP16.94■□□□□ 0.3
VIM-208ENST00000497849 DRAP1Q14919 205 aaPredicted RBP16.94■□□□□ 0.3
VIM-208ENST00000497849 PERM1Q5SV97 790 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 RAP1GAP2Q684P5 730 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 PMF1Q6P1K2 205 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 USP53Q70EK8 1073 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 HORMAD1Q86X24 394 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 FAM186BQ8IYM0 893 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 FBXL13Q8NEE6 735 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 ZNF548Q8NEK5 533 aaPredicted RBP16.94■□□□□ 0.3
VIM-208ENST00000497849 SLC35F5Q8WV83 523 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 SGF29Q96ES7 293 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 GPR27Q9NS67 375 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 EXOC1Q9NV70 894 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 RAB20Q9NX57 234 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 TLR6Q9Y2C9 796 aa16.94■□□□□ 0.3
VIM-208ENST00000497849 USP9YO00507 2555 aaPredicted RBP16.94■□□□□ 0.3
VIM-208ENST00000497849 MYO9AB2RTY4 2548 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 C1QTNF3-AMACRE9PGA6 284 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 ALOX15BO15296 676 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 ATP9BO43861 1147 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 TCEA3O75764 348 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 ITGA2BP08514 1039 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 CD19P15391 556 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 TACR2P21452 398 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 AKT2P31751 481 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 GTF2H1P32780 548 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 VASPP50552 380 aaPredicted RBP16.93■□□□□ 0.3
VIM-208ENST00000497849 PLK1P53350 603 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 HNRNPKP61978 463 aaKnown RBP eCLIP16.93■□□□□ 0.3
VIM-208ENST00000497849 SULT2A1Q06520 285 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 SLC12A1Q13621 1099 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 FZD2Q14332 565 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 TGIF1Q15583 401 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 NFIL3Q16649 462 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 OR6B2Q6IFH4 312 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 NEK5Q6P3R8 708 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 Q6ZSR6 202 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 TPCN2Q8NHX9 752 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 BMFQ96LC9 184 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 SERPINB11Q96P15 392 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 SEMA3CQ99985 751 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 ARHGAP9Q9BRR9 750 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 KLF15Q9UIH9 416 aa16.93■□□□□ 0.3
VIM-208ENST00000497849 ZFR2Q9UPR6 939 aaKnown RBP16.93■□□□□ 0.3
VIM-208ENST00000497849 NBASA2RRP1 2371 aa16.92■□□□□ 0.3
VIM-208ENST00000497849 CCDC187A0A096LP49 1063 aa16.92■□□□□ 0.3
VIM-208ENST00000497849 RNF103O00237 685 aa16.92■□□□□ 0.3
VIM-208ENST00000497849 GJB6O95452 261 aa16.92■□□□□ 0.3
VIM-208ENST00000497849 CSF2P04141 144 aa16.92■□□□□ 0.3
VIM-208ENST00000497849 CTSLP07711 333 aa16.92■□□□□ 0.3
VIM-208ENST00000497849 VDRP11473 427 aa16.92■□□□□ 0.3
VIM-208ENST00000497849 GP1BBP13224 206 aa16.92■□□□□ 0.3
VIM-208ENST00000497849 NME1P15531 152 aaKnown RBP16.92■□□□□ 0.3
VIM-208ENST00000497849 MXI1P50539 228 aa16.92■□□□□ 0.3
VIM-208ENST00000497849 TLE1Q04724 770 aa16.92■□□□□ 0.3
VIM-208ENST00000497849 NNTQ13423 1086 aa16.92■□□□□ 0.3
VIM-208ENST00000497849 UBAP2LQ14157 1087 aaKnown RBP16.92■□□□□ 0.3
VIM-208ENST00000497849 DLG2Q15700 870 aa16.92■□□□□ 0.3
VIM-208ENST00000497849 ACCSLQ4AC99 568 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms