RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 ADH1BP00325 375 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 SDHBP21912 280 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 FECHP22830 423 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 TPMTP51580 245 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 CLCN6P51797 869 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 ZNF135P52742 658 aaPredicted RBP16.77■□□□□ 0.28
SF3A1-209ENST00000496189 ARHGAP8P85298 464 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 OGDHQ02218 1023 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 SLC20A2Q08357 652 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 ELAVL3Q14576 367 aaKnown RBP16.77■□□□□ 0.28
SF3A1-209ENST00000496189 MANEALQ5VSG8 457 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 ARMCX6Q7L4S7 300 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 PSTKQ8IV42 348 aaKnown RBP16.77■□□□□ 0.28
SF3A1-209ENST00000496189 OR8D1Q8WZ84 308 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 MYO19Q96H55 970 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 OMDQ99983 421 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 RSPH9Q9H1X1 276 aaPredicted RBP16.77■□□□□ 0.28
SF3A1-209ENST00000496189 MAGEH1Q9H213 219 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 DHX35Q9H5Z1 703 aaKnown RBP16.77■□□□□ 0.28
SF3A1-209ENST00000496189 DNAI1Q9UI46 699 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 VPS51Q9UID3 782 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 EPN1Q9Y6I3 576 aaPredicted RBP16.77■□□□□ 0.28
SF3A1-209ENST00000496189 SPAG17Q6Q759 2223 aa16.77■□□□□ 0.27
SF3A1-209ENST00000496189 USP34Q70CQ2 3546 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 BCLAF3A2AJT9 711 aaKnown RBP16.76■□□□□ 0.27
SF3A1-209ENST00000496189 MEI4A8MW99 385 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 BNIP3LO60238 219 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 PCK1P35558 622 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 SSR1P43307 286 aaKnown RBP16.76■□□□□ 0.27
SF3A1-209ENST00000496189 MAGEA1P43355 309 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 POLD3Q15054 466 aaPredicted RBP16.76■□□□□ 0.27
SF3A1-209ENST00000496189 DLG2Q15700 870 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 CST6Q15828 149 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 AASDHQ4L235 1098 aaPredicted RBP16.76■□□□□ 0.27
SF3A1-209ENST00000496189 WDR45BQ5MNZ6 344 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 C9orf64Q5T6V5 341 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 FAM46CQ5VWP2 391 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 FAM124AQ86V42 546 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 RGL4Q8IZJ4 473 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 SH2D3CQ8N5H7 860 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 ZNF564Q8TBZ8 553 aaPredicted RBP16.76■□□□□ 0.27
SF3A1-209ENST00000496189 PIGKQ92643 395 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 ALG14Q96F25 216 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 TOE1Q96GM8 510 aaKnown RBP16.76■□□□□ 0.27
SF3A1-209ENST00000496189 BTBD1Q9H0C5 482 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 WSB2Q9NYS7 404 aaPredicted RBP16.76■□□□□ 0.27
SF3A1-209ENST00000496189 MBD1Q9UIS9 605 aaPredicted RBP16.76■□□□□ 0.27
SF3A1-209ENST00000496189 HS3ST2Q9Y278 367 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 OR51B4Q9Y5P0 310 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 PLXND1Q9Y4D7 1925 aa16.76■□□□□ 0.27
SF3A1-209ENST00000496189 A0A0D9SEW6 157 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 ZSCAN5CA6NGD5 496 aaPredicted RBP16.75■□□□□ 0.27
SF3A1-209ENST00000496189 C1QTNF3-AMACRE9PGA6 284 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 FAM72CH0Y354 149 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 EEF2KO00418 725 aaKnown RBP16.75■□□□□ 0.27
SF3A1-209ENST00000496189 ALOX15BO15296 676 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 NRDCO43847 1150 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 ATP9BO43861 1147 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 NDUFA10O95299 355 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 LCA5LO95447 670 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 IL1BP01584 269 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 ZNF806P0C7X5 589 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 MIPP30301 263 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 HOXD12P35452 270 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 RPS14P62263 151 aaKnown RBP16.75■□□□□ 0.27
SF3A1-209ENST00000496189 ZNF33AQ06730 810 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 CCDC15Q0P6D6 951 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 HADHQ16836 314 aaKnown RBP16.75■□□□□ 0.27
SF3A1-209ENST00000496189 BOLA3Q53S33 107 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 PPP6R3Q5H9R7 873 aaPredicted RBP16.75■□□□□ 0.27
SF3A1-209ENST00000496189 FAM72AQ5TYM5 149 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 FAM72DQ6L9T8 149 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 PRR23CQ6ZRP0 262 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 USP30Q70CQ3 517 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 FAM72BQ86X60 149 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 SYT12Q8IV01 421 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 RHOT2Q8IXI1 618 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 PYROXD2Q8N2H3 581 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 TXLNBQ8N3L3 684 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 FRMD1Q8N878 549 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 RTL3Q8N8U3 475 aaKnown RBP16.75■□□□□ 0.27
SF3A1-209ENST00000496189 OR7D4Q8NG98 312 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 OR52K2Q8NGK3 314 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 ARHGEF26Q96DR7 871 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 HSPA12BQ96MM6 686 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 SNRNP25Q9BV90 132 aaKnown RBP16.75■□□□□ 0.27
SF3A1-209ENST00000496189 GPR174Q9BXC1 333 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 PACSIN1Q9BY11 444 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 PCED1AQ9H1Q7 454 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 ZWILCHQ9H900 591 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 SGK2Q9HBY8 427 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 SUSD2Q9UGT4 822 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 THADAQ6YHU6 1953 aa16.75■□□□□ 0.27
SF3A1-209ENST00000496189 CXorf51AA0A1B0GTR3 108 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 SOWAHDA6NJG2 315 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 KHNYNO15037 678 aaKnown RBP16.74■□□□□ 0.27
SF3A1-209ENST00000496189 SNAP91O60641 907 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 LRCH4O75427 683 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 RNASEH2AO75792 299 aaKnown RBP16.74■□□□□ 0.27
SF3A1-209ENST00000496189 IGLV3-19P01714 112 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms