RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	HADH	Q16836	314 aa	Known RBP	10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	HNRNPA1L2	Q32P51	320 aa	Known RBP	10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	MAP7D1	Q3KQU3	841 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	BOLA3	Q53S33	107 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	ZFYVE27	Q5T4F4	411 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	FAM124A	Q86V42	546 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	TMTC1	Q8IUR5	882 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	CCDC170	Q8IYT3	715 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	DEFB119	Q8N690	84 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	NIPA2	Q8N8Q9	360 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	RTL3	Q8N8U3	475 aa	Known RBP	10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	DCAF4L2	Q8NA75	395 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	ATP11C	Q8NB49	1132 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	SUMF1	Q8NBK3	374 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	GANC	Q8TET4	914 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	PRCC	Q92733	491 aa	Predicted RBP	10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	ARHGEF2	Q92974	986 aa	Known RBP	10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	CELF6	Q96J87	481 aa	Known RBP	10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	SPACA7	Q96KW9	195 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	BAG1	Q99933	345 aa	Predicted RBP	10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	CATSPERB	Q9H7T0	1116 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	KLHL11	Q9NVR0	708 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	IMPACT	Q9P2X3	320 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	NCDN	Q9UBB6	729 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	PCDHA13	Q9Y5I0	950 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	ACTL7A	Q9Y615	435 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	USP34	Q70CQ2	3546 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	CHD5	Q8TDI0	1954 aa		10.06	□□□□□ -0.8
CALD1-223	ENST00000496024	GVINP1	Q7Z2Y8	2422 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	EIF3CL	B5ME19	914 aa	Known RBP	10.05	□□□□□ -0.8
CALD1-223	ENST00000496024		H3BRJ5	948 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	FGF10	O15520	208 aa	Predicted RBP	10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	SMAD6	O43541	496 aa	Known RBP	10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	RNASEH1	O60930	286 aa	Known RBP	10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	NDUFA10	O95299	355 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	IPO7	O95373	1038 aa	Known RBP	10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	SRC	P12931	536 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	ERCC2	P18074	760 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	CDH6	P55285	790 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	TAS2R40	P59535	323 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	SLC25A11	Q02978	314 aa	Known RBP	10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	BYSL	Q13895	437 aa	Known RBP	10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	KRT81	Q14533	505 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	ELF2	Q15723	593 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	PLK5	Q496M5	336 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	ATP13A4	Q4VNC1	1196 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	C9orf64	Q5T6V5	341 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	ZNF776	Q68DI1	518 aa	Predicted RBP	10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	RAD9B	Q6WBX8	426 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	ZNF783	Q6ZMS7	281 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	RFX8	Q6ZV50	586 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024		Q6ZVU0	165 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	ARMCX6	Q7L4S7	300 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	PSTK	Q8IV42	348 aa	Known RBP	10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	MMAA	Q8IVH4	418 aa	Known RBP	10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	RHOT2	Q8IXI1	618 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	TMEFF1	Q8IYR6	380 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	STK40	Q8N2I9	435 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	DCLK2	Q8N568	766 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	SH2D3C	Q8N5H7	860 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	KDM1B	Q8NB78	822 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	ACRBP	Q8NEB7	543 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	FRS2	Q8WU20	508 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	RFFL	Q8WZ73	363 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	PTPRN2	Q92932	1015 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	EIF3C	Q99613	913 aa	Known RBP	10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	KLC2	Q9H0B6	622 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	DUSP15	Q9H1R2	295 aa	Predicted RBP	10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	MAGEH1	Q9H213	219 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	TNKS2	Q9H2K2	1166 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	CWC15	Q9P013	229 aa	Known RBP	10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	MBD1	Q9UIS9	605 aa	Predicted RBP	10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	HPCAL4	Q9UM19	191 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	HYOU1	Q9Y4L1	999 aa		10.05	□□□□□ -0.8
CALD1-223	ENST00000496024	NYNRIN	Q9P2P1	1898 aa	Known RBP	10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	PLXND1	Q9Y4D7	1925 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	ZNF292	O60281	2723 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	IGHV1OR15-9	A0A0B4J2B8	117 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	TARSL2	A2RTX5	802 aa	Known RBP	10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	RASA4B	C9J798	803 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	MID1	O15344	667 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	RASA4	O43374	803 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	BUB1	O43683	1085 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	ATP9B	O43861	1147 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	ZMPSTE24	O75844	475 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	RHOBTB1	O94844	696 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	LCA5L	O95447	670 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	DNTT	P04053	509 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	FECH	P22830	423 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	AMPD1	P23109	780 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	ETFB	P38117	255 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	ARL4A	P40617	200 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	PSMD8	P48556	350 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	DHPS	P49366	369 aa	Predicted RBP	10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	DNA2	P51530	1060 aa		10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	RPS14	P62263	151 aa	Known RBP	10.04	□□□□□ -0.8
CALD1-223	ENST00000496024	ARF5	P84085	180 aa		10.04	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms