RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 POU2F3Q9UKI9 436 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 COPG1Q9Y678 874 aaKnown RBP11.91□□□□□ -0.5
HDAC4-210ENST00000493582 MYO18AQ92614 2054 aaKnown RBP11.91□□□□□ -0.5
HDAC4-210ENST00000493582 NFIBO00712 420 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 ENDOD1O94919 500 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 PIGNO95427 931 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 MYCLP12524 364 aaPredicted RBP11.91□□□□□ -0.5
HDAC4-210ENST00000493582 S100A1P23297 94 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 CRKP46108 304 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 SP4Q02446 784 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 TNK2Q07912 1038 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 CBLBQ13191 982 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 SF3B4Q15427 424 aaKnown RBP eCLIP11.91□□□□□ -0.53e-7■■■■■ 39.3
HDAC4-210ENST00000493582 PHKG1Q16816 387 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 INSCQ1MX18 579 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 ARL13AQ5H913 290 aaPredicted RBP11.91□□□□□ -0.5
HDAC4-210ENST00000493582 FAM47CQ5HY64 1035 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 LAYNQ6UX15 382 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 FNIP1Q8TF40 1166 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 CANT1Q8WVQ1 401 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 CYGBQ8WWM9 190 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 RTP4Q96DX8 246 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 NSMCE3Q96MG7 304 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 TARS2Q9BW92 718 aaKnown RBP11.91□□□□□ -0.5
HDAC4-210ENST00000493582 NACA2Q9H009 215 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 ANKEF1Q9NU02 776 aa11.91□□□□□ -0.5
HDAC4-210ENST00000493582 TPST1O60507 370 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 ALDH1A2O94788 518 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 ASS1P00966 412 aaKnown RBP11.9□□□□□ -0.5
HDAC4-210ENST00000493582 ARSAP15289 507 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 CDH5P33151 784 aaPredicted RBP11.9□□□□□ -0.5
HDAC4-210ENST00000493582 MAGEA6P43360 314 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 RPL14P50914 215 aaKnown RBP11.9□□□□□ -0.5
HDAC4-210ENST00000493582 DCLK2Q8N568 766 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 SNX31Q8N9S9 440 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 PCDH19Q8TAB3 1148 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 MSTO1Q9BUK6 570 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 ADI1Q9BV57 179 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 KLHL25Q9H0H3 589 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 EHD1Q9H4M9 534 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 PTBP2Q9UKA9 531 aaKnown RBP11.9□□□□□ -0.5
HDAC4-210ENST00000493582 PCDHGC3Q9UN70 934 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 SNAP91O60641 907 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 TADA2AO75478 443 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 ATG7O95352 703 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 CCNA2P20248 432 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 NR4A1P22736 598 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 TCEA1P23193 301 aaKnown RBP11.9□□□□□ -0.5
HDAC4-210ENST00000493582 MGAT1P26572 445 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 SLC7A1P30825 629 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 EN1Q05925 392 aaPredicted RBP11.9□□□□□ -0.5
HDAC4-210ENST00000493582 DMPKQ09013 629 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 PITRM1Q5JRX3 1037 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 CPSF7Q8N684 471 aaKnown RBP11.9□□□□□ -0.5
HDAC4-210ENST00000493582 CGRRF1Q99675 332 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 MTMR12Q9C0I1 747 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 ZNF385DQ9H6B1 395 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 SOX17Q9H6I2 414 aaPredicted RBP11.9□□□□□ -0.5
HDAC4-210ENST00000493582 SLC27A5Q9Y2P5 690 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 CPQQ9Y646 472 aa11.9□□□□□ -0.5
HDAC4-210ENST00000493582 TMEM233B4DJY2 109 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 APOL1O14791 398 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 CLASP2O75122 1294 aaKnown RBP11.89□□□□□ -0.51
HDAC4-210ENST00000493582 BCL10O95999 233 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 CA8P35219 290 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 GSSP48637 474 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 PCYT1AP49585 367 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 YWHAEP62258 255 aaKnown RBP11.89□□□□□ -0.51
HDAC4-210ENST00000493582 MERTKQ12866 999 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 GLRA4Q5JXX5 417 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 ZNF618Q5T7W0 954 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 FAM102AQ5T9C2 384 aaPredicted RBP11.89□□□□□ -0.51
HDAC4-210ENST00000493582 FAM117BQ6P1L5 589 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 TMCO5AQ8N6Q1 288 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 SLC4A11Q8NBS3 891 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 POLR3FQ9H1D9 316 aaPredicted RBP11.89□□□□□ -0.51
HDAC4-210ENST00000493582 PALMDQ9NP74 551 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 GABBR1Q9UBS5 961 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 FBXO40Q9UH90 709 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 LOXHD1Q8IVV2 1947 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 BCLAF3A2AJT9 711 aaKnown RBP11.89□□□□□ -0.51
HDAC4-210ENST00000493582 MYF6P23409 242 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 IDUAP35475 653 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 POLR2IP36954 125 aaKnown RBP11.89□□□□□ -0.51
HDAC4-210ENST00000493582 TNFSF9P41273 254 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 RAP1GAPP47736 663 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 NAGLUP54802 743 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 RPS6P62753 249 aaKnown RBP11.89□□□□□ -0.51
HDAC4-210ENST00000493582 RFTN1Q14699 578 aaPredicted RBP11.89□□□□□ -0.51
HDAC4-210ENST00000493582 OXA1LQ15070 435 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 CA9Q16790 459 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 TRNP1Q6NT89 227 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 HHIPL2Q6UWX4 724 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 DPH6Q7L8W6 267 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 HGH1Q9BTY7 390 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 NANOGQ9H9S0 305 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 ASNSD1Q9NWL6 643 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 SUCOQ9UBS9 1254 aaKnown RBP11.89□□□□□ -0.51
HDAC4-210ENST00000493582 AURKCQ9UQB9 309 aa11.89□□□□□ -0.51
HDAC4-210ENST00000493582 CDYLQ9Y232 598 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms