RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 CCDC181Q5TID7 509 aa10.55□□□□□ -0.72
SKA1-204ENST00000488454 RNF43Q68DV7 783 aa10.55□□□□□ -0.72
SKA1-204ENST00000488454 NAIF1Q69YI7 327 aaPredicted RBP10.55□□□□□ -0.72
SKA1-204ENST00000488454 CXorf57Q6NSI4 855 aaKnown RBP10.55□□□□□ -0.72
SKA1-204ENST00000488454 MFSD7Q6UXD7 560 aa10.55□□□□□ -0.72
SKA1-204ENST00000488454 SPOCD1Q6ZMY3 1216 aa10.55□□□□□ -0.72
SKA1-204ENST00000488454 BZW1Q7L1Q6 419 aaKnown RBP10.55□□□□□ -0.72
SKA1-204ENST00000488454 UMODL1-AS1Q8N2C9 162 aa10.55□□□□□ -0.72
SKA1-204ENST00000488454 SLC35F6Q8N357 371 aa10.55□□□□□ -0.72
SKA1-204ENST00000488454 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.55□□□□□ -0.72
SKA1-204ENST00000488454 TERB1Q8NA31 727 aa10.55□□□□□ -0.72
SKA1-204ENST00000488454 FLCNQ8NFG4 579 aa10.55□□□□□ -0.72
SKA1-204ENST00000488454 PCDH19Q8TAB3 1148 aa10.55□□□□□ -0.72
SKA1-204ENST00000488454 P2RY11Q96G91 374 aa10.55□□□□□ -0.72
SKA1-204ENST00000488454 MRGPRX2Q96LB1 330 aa10.55□□□□□ -0.72
SKA1-204ENST00000488454 FEM1AQ9BSK4 669 aa10.55□□□□□ -0.72
SKA1-204ENST00000488454 C2orf49Q9BVC5 232 aaPredicted RBP10.55□□□□□ -0.72
SKA1-204ENST00000488454 TBC1D17Q9HA65 648 aa10.55□□□□□ -0.72
SKA1-204ENST00000488454 FBRSL1Q9HCM7 1045 aaKnown RBP10.55□□□□□ -0.72
SKA1-204ENST00000488454 ATP13A1Q9HD20 1204 aa10.55□□□□□ -0.72
SKA1-204ENST00000488454 LTB4R2Q9NPC1 389 aa10.55□□□□□ -0.72
SKA1-204ENST00000488454 ELOVL2Q9NXB9 296 aa10.55□□□□□ -0.72
SKA1-204ENST00000488454 TMEM221A6NGB7 291 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 ARHGAP42A6NI28 874 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 C3orf70A6NLC5 250 aaPredicted RBP10.54□□□□□ -0.72
SKA1-204ENST00000488454 M0R296 226 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 DCLK1O15075 740 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 DDX3YO15523 660 aaKnown RBP10.54□□□□□ -0.72
SKA1-204ENST00000488454 TJP3O95049 919 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 EGFP01133 1207 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 ASLP04424 464 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 PYGMP11217 842 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 MZF1P28698 734 aaPredicted RBP10.54□□□□□ -0.72
SKA1-204ENST00000488454 NNMTP40261 264 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 CDKN2BP42772 138 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 PLK1P53350 603 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 ST8SIA6P61647 398 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 SH3BP2P78314 561 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 ECT2LQ008S8 904 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 PPP2R5EQ16537 467 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 PLEKHG6Q3KR16 790 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 LINC01559Q495D7 138 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 PITRM1Q5JRX3 1037 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 SEL1L2Q5TEA6 688 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 MBLAC2Q68D91 279 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 SDE2Q6IQ49 451 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 FSTL4Q6MZW2 842 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 RETSATQ6NUM9 610 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 TRMT11Q7Z4G4 463 aaKnown RBP10.54□□□□□ -0.72
SKA1-204ENST00000488454 KIAA0907Q7Z7F0 614 aaPredicted RBP10.54□□□□□ -0.72
SKA1-204ENST00000488454 CYP4X1Q8N118 509 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 C17orf53Q8N3J3 647 aaPredicted RBP10.54□□□□□ -0.72
SKA1-204ENST00000488454 SYNPOQ8N3V7 929 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 WFDC5Q8TCV5 224 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 ALG3Q92685 438 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 FAF2Q96CS3 445 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 CELF6Q96J87 481 aaKnown RBP10.54□□□□□ -0.72
SKA1-204ENST00000488454 HEMGNQ9BXL5 484 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 OSBPL6Q9BZF3 934 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 LMAN1LQ9HAT1 526 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 NDFIP2Q9NV92 336 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 SLC25A13Q9UJS0 675 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 SLC8A2Q9UPR5 921 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 NEU3Q9UQ49 428 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 EFR3BQ9Y2G0 817 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 SIT1Q9Y3P8 196 aa10.54□□□□□ -0.72
SKA1-204ENST00000488454 A0A0D9SEW6 157 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 CTAGE9A4FU28 777 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 FAM187AA6NFU0 413 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 RASA4BC9J798 803 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 PRRT4C9JH25 899 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 K7EQS6 105 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 CBX4O00257 560 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 DFFAO00273 331 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 ENC1O14682 589 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 RASA4O43374 803 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 CST8O60676 142 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 ATG13O75143 517 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 DLDP09622 509 aaKnown RBP10.53□□□□□ -0.72
SKA1-204ENST00000488454 KRT10P13645 584 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 MX2P20592 715 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 TARSP26639 723 aaKnown RBP10.53□□□□□ -0.72
SKA1-204ENST00000488454 PAPOLAP51003 745 aaKnown RBP10.53□□□□□ -0.72
SKA1-204ENST00000488454 SEC13P55735 322 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 DYNLT1P63172 113 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 MRPS21P82921 87 aaKnown RBP10.53□□□□□ -0.72
SKA1-204ENST00000488454 SLC20A2Q08357 652 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 ZNF211Q13398 564 aaPredicted RBP10.53□□□□□ -0.72
SKA1-204ENST00000488454 PAFAH1B3Q15102 231 aaKnown RBP10.53□□□□□ -0.72
SKA1-204ENST00000488454 LLGL1Q15334 1064 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 TAZQ16635 292 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 FUT11Q495W5 492 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 ARTNQ5T4W7 220 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 ADIPOR2Q86V24 386 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 LRRC49Q8IUZ0 686 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 APCDD1Q8J025 514 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 PHTF2Q8N3S3 785 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 DCAF4L2Q8NA75 395 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 OR7D4Q8NG98 312 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 OR52K2Q8NGK3 314 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms