RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 AVILO75366 819 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 PSMC3P17980 439 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 RPS6KA3P51812 740 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 CCL14Q16627 93 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 SPANXN3Q5MJ09 141 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 RAP1GAP2Q684P5 730 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 TRIM48Q8IWZ4 208 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 IL1RL2Q9HB29 575 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 LZTS1Q9Y250 596 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 TSC22D4Q9Y3Q8 395 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 MYH13Q9UKX3 1938 aa11.21□□□□□ -0.61
HDAC6-228ENST00000486227 FGBP02675 491 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 UNGP13051 313 aaPredicted RBP11.21□□□□□ -0.62
HDAC6-228ENST00000486227 SP100P23497 879 aaPredicted RBP11.21□□□□□ -0.62
HDAC6-228ENST00000486227 RPA3P35244 121 aaPredicted RBP11.21□□□□□ -0.62
HDAC6-228ENST00000486227 DCTN2Q13561 401 aaKnown RBP11.21□□□□□ -0.62
HDAC6-228ENST00000486227 C16orf46Q6P387 395 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 ZCCHC23Q6ZST2 131 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 GDPD5Q8WTR4 605 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 PIK3R5Q8WYR1 880 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 STN1Q9H668 368 aaKnown RBP11.21□□□□□ -0.62
HDAC6-228ENST00000486227 ATXN10Q9UBB4 475 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 MRPS23Q9Y3D9 190 aaKnown RBP11.21□□□□□ -0.62
HDAC6-228ENST00000486227 SLC9A3R1O14745 358 aaPredicted RBP11.21□□□□□ -0.62
HDAC6-228ENST00000486227 PRPF4O43172 522 aaKnown RBP eCLIP11.21□□□□□ -0.625e-6■■□□□ 13.5
HDAC6-228ENST00000486227 NFKB1P19838 968 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 ADARP55265 1226 aaKnown RBP11.21□□□□□ -0.62
HDAC6-228ENST00000486227 PPIGQ13427 754 aaKnown RBP eCLIP11.21□□□□□ -0.624e-7■■■□□ 15.6
HDAC6-228ENST00000486227 TAF5Q15542 800 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 ZNF284Q2VY69 593 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 RFWD2Q8NHY2 731 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 GPR152Q8TDT2 470 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 APBB2Q92870 758 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 NDNQ99608 321 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 TBL1YQ9BQ87 522 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 DPEP3Q9H4B8 488 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 ARHGEF3Q9NR81 526 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 GID8Q9NWU2 228 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 RNF112Q9ULX5 631 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 PCDHGB4Q9UN71 923 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 FAM50BQ9Y247 325 aa11.21□□□□□ -0.62
HDAC6-228ENST00000486227 PMM2O15305 246 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 EDF1O60869 148 aaKnown RBP11.2□□□□□ -0.62
HDAC6-228ENST00000486227 TNFAIP8O95379 198 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 PIGRP01833 764 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 SERPIND1P05546 499 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 ABCE1P61221 599 aaKnown RBP11.2□□□□□ -0.62
HDAC6-228ENST00000486227 PPIDQ08752 370 aaKnown RBP11.2□□□□□ -0.62
HDAC6-228ENST00000486227 SLC25A52Q3SY17 297 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 GRTP1Q5TC63 336 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 B3GNT6Q6ZMB0 384 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 NET1Q7Z628 596 aaPredicted RBP11.2□□□□□ -0.62
HDAC6-228ENST00000486227 OOSP2Q86WS3 158 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 GALNT15Q8N3T1 639 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 ZNF557Q8N988 423 aaPredicted RBP11.2□□□□□ -0.62
HDAC6-228ENST00000486227 FNIP1Q8TF40 1166 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 ADGRE3Q9BY15 652 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 UTP6Q9NYH9 597 aaKnown RBP11.2□□□□□ -0.62
HDAC6-228ENST00000486227 HEATR9A2RTY3 570 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 MOXD2PA6NHM9 499 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 TRPC5OSA6NMA1 111 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 E9PBE3 544 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 MAN1A2O60476 641 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 KLHL41O60662 606 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 DAB1O75553 588 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 CYP2C18P33260 490 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 ATP5C1P36542 298 aaKnown RBP11.2□□□□□ -0.62
HDAC6-228ENST00000486227 CDKN2BP42772 138 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 PSEN1P49768 467 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 LILRA4P59901 499 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 IYDQ6PHW0 289 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 ECHDC2Q86YB7 292 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 PCYOX1LQ8NBM8 494 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 EZH1Q92800 747 aaPredicted RBP11.2□□□□□ -0.62
HDAC6-228ENST00000486227 ASAH2Q9NR71 780 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 SFMBT1Q9UHJ3 866 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 CLCA2Q9UQC9 943 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 AP4S1Q9Y587 144 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 MT-CO1P00395 513 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 CD48P09326 243 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 FAM58BPP0C7Q3 252 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 SERPINB5P36952 375 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 NUP107P57740 925 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 GBE1Q04446 702 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 INPP5AQ14642 412 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 TTLL9Q3SXZ7 439 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 AARS2Q5JTZ9 985 aaKnown RBP11.2□□□□□ -0.62
HDAC6-228ENST00000486227 SEL1L3Q68CR1 1132 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 C16orf59Q7L2K0 433 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 GPR141Q7Z602 305 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 TUBGCP3Q96CW5 907 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 PHF21BQ96EK2 531 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 ARMCX1Q9P291 453 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 ALOX15BO15296 676 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 RBP1P09455 135 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 OR4Q2P0C623 313 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 ADRA1BP35368 520 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 NUDT2P50583 147 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 CLCNKBP51801 687 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 OASLQ15646 514 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms