RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 PMS2CLQ68D20 193 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 RETSATQ6NUM9 610 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 POLNQ7Z5Q5 900 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 ZNF366Q8N895 744 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 TSC1Q92574 1164 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 PRCCQ92733 491 aaPredicted RBP16.26■□□□□ 0.19
UPF3A-208ENST00000484246 PTPRN2Q92932 1015 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 SIPA1Q96FS4 1042 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 CEP44Q9C0F1 390 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 ATP13A1Q9HD20 1204 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 RAB23Q9ULC3 237 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 SCML1Q9UN30 329 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 EPN1Q9Y6I3 576 aaPredicted RBP16.26■□□□□ 0.19
UPF3A-208ENST00000484246 CKAP5Q14008 2032 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 IGHV1OR15-9A0A0B4J2B8 117 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 ZSCAN5CA6NGD5 496 aaPredicted RBP16.25■□□□□ 0.19
UPF3A-208ENST00000484246 SOWAHDA6NJG2 315 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 TTC34A8MYJ7 566 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 H3BRJ5 948 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 ALOX15BO15296 676 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 GFRA3O60609 400 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 SRCP12931 536 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 SERPINH1P50454 418 aaKnown RBP16.25■□□□□ 0.19
UPF3A-208ENST00000484246 ARSEP51690 589 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 NDST2P52849 883 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 GSDMDP57764 484 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 RPS14P62263 151 aaKnown RBP16.25■□□□□ 0.19
UPF3A-208ENST00000484246 ARF5P84085 180 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 AFMIDQ63HM1 303 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 ZNF776Q68DI1 518 aaPredicted RBP16.25■□□□□ 0.19
UPF3A-208ENST00000484246 TXNRD3NBQ6F5E7 133 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 SLC36A4Q6YBV0 504 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 CEP68Q76N32 757 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 KBTBD6Q86V97 674 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 PGBD3Q8N328 593 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 FAM160A2Q8N612 972 aaPredicted RBP16.25■□□□□ 0.19
UPF3A-208ENST00000484246 RPL10LQ96L21 214 aaKnown RBP16.25■□□□□ 0.19
UPF3A-208ENST00000484246 BAG1Q99933 345 aaPredicted RBP16.25■□□□□ 0.19
UPF3A-208ENST00000484246 KLC2Q9H0B6 622 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 DUSP15Q9H1R2 295 aaPredicted RBP16.25■□□□□ 0.19
UPF3A-208ENST00000484246 LRRC19Q9H756 370 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 ZWILCHQ9H900 591 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 ITM2CQ9NQX7 267 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.25■□□□□ 0.19
UPF3A-208ENST00000484246 CWC15Q9P013 229 aaKnown RBP16.25■□□□□ 0.19
UPF3A-208ENST00000484246 DNAI1Q9UI46 699 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 PCDHA13Q9Y5I0 950 aa16.25■□□□□ 0.19
UPF3A-208ENST00000484246 GOLGA6L6A8MZA4 724 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 LRP3O75074 770 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 KRT7P08729 469 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 GOT1P17174 413 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 BCKDHBP21953 392 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 ACVRL1P37023 503 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 POLD3Q15054 466 aaPredicted RBP16.24■□□□□ 0.19
UPF3A-208ENST00000484246 DLG2Q15700 870 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 ELF2Q15723 593 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 SMTNL2Q2TAL5 461 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 KCNT1Q5JUK3 1230 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 LRRC38Q5VT99 294 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 KIAA1324Q6UXG2 1013 aaKnown RBP16.24■□□□□ 0.19
UPF3A-208ENST00000484246 RAD9BQ6WBX8 426 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 PLPP6Q8IY26 295 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 LZTR1Q8N653 840 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 RUBCNQ92622 972 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 ISG20Q96AZ6 181 aaKnown RBP16.24■□□□□ 0.19
UPF3A-208ENST00000484246 CALR3Q96L12 384 aaKnown RBP16.24■□□□□ 0.19
UPF3A-208ENST00000484246 CSPG4P5Q96PW8 444 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 SPON2Q9BUD6 331 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 SLC6A17Q9H1V8 727 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 MTG2Q9H4K7 406 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 PCDH18Q9HCL0 1135 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 MBD1Q9UIS9 605 aaPredicted RBP16.24■□□□□ 0.19
UPF3A-208ENST00000484246 PCDHGA5Q9Y5G8 931 aa16.24■□□□□ 0.19
UPF3A-208ENST00000484246 GPR179Q6PRD1 2367 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 BTNL10A8MVZ5 291 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 ZNF487B1APH4 448 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 RASA4BC9J798 803 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 CBX4O00257 560 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 DCLK1O15075 740 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 RASA4O43374 803 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 KDELR3O43731 214 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 RHOBTB1O94844 696 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 EPN2O95208 641 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 IPO7O95373 1038 aaKnown RBP16.23■□□□□ 0.19
UPF3A-208ENST00000484246 CD160O95971 181 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 MT-CO1P00395 513 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 RETP07949 1114 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 ERCC2P18074 760 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 GLDCP23378 1020 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 OXTRP30559 389 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 ARL4AP40617 200 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 SLC1A1P43005 524 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 TPMTP51580 245 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 TAS2R40P59535 323 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 TTC31Q49AM3 519 aaPredicted RBP16.23■□□□□ 0.19
UPF3A-208ENST00000484246 PPP6R3Q5H9R7 873 aaPredicted RBP16.23■□□□□ 0.19
UPF3A-208ENST00000484246 IL31Q6EBC2 164 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 C22orf39Q6P5X5 142 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 PRR23BQ6ZRT6 265 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 USP30Q70CQ3 517 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms