RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ERCC6Q03468 1493 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 METTL18O95568 372 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 IFNA2P01563 188 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 TBXAS1P24557 533 aaPredicted RBP6.48□□□□□ -1.37
USP40-213ENST00000483216 PAPOLAP51003 745 aaKnown RBP6.48□□□□□ -1.37
USP40-213ENST00000483216 CYP2J2P51589 502 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 MVDP53602 400 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 GAD2Q05329 585 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 PPFIA1Q13136 1202 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 C5orf22Q49AR2 442 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 INO80DQ53TQ3 878 aaPredicted RBP6.48□□□□□ -1.37
USP40-213ENST00000483216 RUNDC3AQ59EK9 446 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 ENTPD8Q5MY95 495 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 FAM171A1Q5VUB5 890 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 AWAT2Q6E213 333 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 AADACL2Q6P093 401 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 RNF144BQ7Z419 303 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 SLC25A41Q8N5S1 370 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 TMEM174Q8WUU8 243 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 SLC25A28Q96A46 364 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 PPP1R10Q96QC0 940 aaKnown RBP6.48□□□□□ -1.37
USP40-213ENST00000483216 FRG2BQ96QU4 278 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 CADM1Q9BY67 442 aaKnown RBP6.48□□□□□ -1.37
USP40-213ENST00000483216 PNRC2Q9NPJ4 139 aaKnown RBP6.48□□□□□ -1.37
USP40-213ENST00000483216 ANAPC4Q9UJX5 808 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 GPR52Q9Y2T5 361 aa6.48□□□□□ -1.37
USP40-213ENST00000483216 TRBV5-7A0A0A0MS05 114 aa6.47□□□□□ -1.37
USP40-213ENST00000483216 MYMKA6NI61 221 aa6.47□□□□□ -1.37
USP40-213ENST00000483216 SYN3O14994 580 aa6.47□□□□□ -1.37
USP40-213ENST00000483216 MDM4O15151 490 aa6.47□□□□□ -1.37
USP40-213ENST00000483216 RXRAP19793 462 aa6.47□□□□□ -1.37
USP40-213ENST00000483216 KLRC2P26717 231 aa6.47□□□□□ -1.37
USP40-213ENST00000483216 CBWD5Q5RIA9 395 aa6.47□□□□□ -1.37
USP40-213ENST00000483216 HMBOX1Q6NT76 420 aa6.47□□□□□ -1.37
USP40-213ENST00000483216 CCDC25Q86WR0 208 aa6.47□□□□□ -1.37
USP40-213ENST00000483216 C2CD5Q86YS7 1000 aa6.47□□□□□ -1.37
USP40-213ENST00000483216 BRSK2Q8IWQ3 736 aa6.47□□□□□ -1.37
USP40-213ENST00000483216 FAM185AQ8N0U4 392 aa6.47□□□□□ -1.37
USP40-213ENST00000483216 LINS1Q8NG48 757 aa6.47□□□□□ -1.37
USP40-213ENST00000483216 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.47□□□□□ -1.37
USP40-213ENST00000483216 HIPK3Q9H422 1215 aa6.47□□□□□ -1.37
USP40-213ENST00000483216 ACTR5Q9H9F9 607 aaPredicted RBP6.47□□□□□ -1.37
USP40-213ENST00000483216 NOD2Q9HC29 1040 aa6.47□□□□□ -1.37
USP40-213ENST00000483216 PDS5BQ9NTI5 1447 aa6.47□□□□□ -1.37
USP40-213ENST00000483216 C11orf97A0A1B0GVM6 126 aaPredicted RBP6.46□□□□□ -1.38
USP40-213ENST00000483216 GAGE12JA6NER3 117 aa6.46□□□□□ -1.38
USP40-213ENST00000483216 STX16-NPEPL1H3BU86 382 aa6.46□□□□□ -1.38
USP40-213ENST00000483216 STX16O14662 325 aa6.46□□□□□ -1.38
USP40-213ENST00000483216 SYNJ1O43426 1573 aa6.46□□□□□ -1.38
USP40-213ENST00000483216 EIF3JO75822 258 aaKnown RBP6.46□□□□□ -1.38
USP40-213ENST00000483216 SOGA1O94964 1423 aa6.46□□□□□ -1.38
USP40-213ENST00000483216 SYF2O95926 243 aaKnown RBP6.46□□□□□ -1.38
USP40-213ENST00000483216 TOMM40O96008 361 aa6.46□□□□□ -1.38
USP40-213ENST00000483216 FCGR2AP12318 317 aa6.46□□□□□ -1.38
USP40-213ENST00000483216 CCT4P50991 539 aaKnown RBP6.46□□□□□ -1.38
USP40-213ENST00000483216 DHX8Q14562 1220 aaKnown RBP6.46□□□□□ -1.38
USP40-213ENST00000483216 ZNF260Q3ZCT1 412 aa6.46□□□□□ -1.38
USP40-213ENST00000483216 CEP70Q8NHQ1 597 aa6.46□□□□□ -1.38
USP40-213ENST00000483216 MORC4Q8TE76 937 aa6.46□□□□□ -1.38
USP40-213ENST00000483216 ZNF419Q96HQ0 510 aaPredicted RBP6.46□□□□□ -1.38
USP40-213ENST00000483216 RBM17Q96I25 401 aaKnown RBP6.46□□□□□ -1.38
USP40-213ENST00000483216 MAP6D1Q9H9H5 199 aa6.46□□□□□ -1.38
USP40-213ENST00000483216 ZDHHC7Q9NXF8 308 aa6.46□□□□□ -1.38
USP40-213ENST00000483216 DNAJC16Q9Y2G8 782 aa6.46□□□□□ -1.38
USP40-213ENST00000483216 RRP7AQ9Y3A4 280 aaKnown RBP6.46□□□□□ -1.38
USP40-213ENST00000483216 B4DGG1 531 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 TPD52L2O43399 206 aaKnown RBP6.45□□□□□ -1.38
USP40-213ENST00000483216 KLKB1P03952 638 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 PRKCHP24723 683 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 KRTAP10-11P60412 298 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 PTGR1Q14914 329 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 PRTGQ2VWP7 1150 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 NUGGCQ68CJ6 796 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 DENND1BQ6P3S1 775 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 GPSM1Q86YR5 675 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 USP38Q8NB14 1042 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 HDAC7Q8WUI4 952 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 ZBTB9Q96C00 473 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 MASTLQ96GX5 879 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 PYM1Q9BRP8 204 aaKnown RBP6.45□□□□□ -1.38
USP40-213ENST00000483216 FAM234AQ9H0X4 552 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 ACAD9Q9H845 621 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 UPB1Q9UBR1 384 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 CD207Q9UJ71 328 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 OSGIN2Q9Y236 505 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 SLC4A4Q9Y6R1 1079 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 CUX2O14529 1486 aa6.45□□□□□ -1.38
USP40-213ENST00000483216 LAMC3Q9Y6N6 1575 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 MST1RQ04912 1400 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 FAM90A10PA6NDY2 464 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 C17orf100A8MU93 164 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 H3BNX3 289 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 CNPP09543 421 aaKnown RBP6.44□□□□□ -1.38
USP40-213ENST00000483216 HSD3B1P14060 373 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 POLD2P49005 469 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 ARHGAP8P85298 464 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 BYSLQ13895 437 aaKnown RBP6.44□□□□□ -1.38
USP40-213ENST00000483216 ANKRD1Q15327 319 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 TECPR1Q7Z6L1 1165 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 ANKRD18AQ8IVF6 992 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms