RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 GARSP41250 739 aaKnown RBP12.51□□□□□ -0.41
SDC1-206ENST00000482879 ATP5OP48047 213 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 EIF3EP60228 445 aaKnown RBP12.51□□□□□ -0.41
SDC1-206ENST00000482879 PRKCQQ04759 706 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 SULT2A1Q06520 285 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 TUBB2AQ13885 445 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 SIX1Q15475 284 aaPredicted RBP12.51□□□□□ -0.41
SDC1-206ENST00000482879 TMEM215Q68D42 235 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 ARHGAP36Q6ZRI8 547 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 B4GALNT4Q76KP1 1039 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 ADIPOR2Q86V24 386 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 ZC3H18Q86VM9 953 aaKnown RBP12.51□□□□□ -0.41
SDC1-206ENST00000482879 DCAF4L2Q8NA75 395 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 LRRN4Q8WUT4 740 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 FAM3CQ92520 227 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 TTC17Q96AE7 1141 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 OLFM3Q96PB7 478 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 UHRF1Q96T88 793 aaPredicted RBP12.51□□□□□ -0.41
SDC1-206ENST00000482879 LGMNQ99538 433 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 TUBB2BQ9BVA1 445 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 C2orf49Q9BVC5 232 aaPredicted RBP12.51□□□□□ -0.41
SDC1-206ENST00000482879 AP1M1Q9BXS5 423 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 FRMD8P1Q9BZ68 369 aaPredicted RBP12.51□□□□□ -0.41
SDC1-206ENST00000482879 CIPCQ9C0C6 399 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 BRD8Q9H0E9 1235 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 SP110Q9HB58 689 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 ARHGEF3Q9NR81 526 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 ELOVL2Q9NXB9 296 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 VPS51Q9UID3 782 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 A0A0A0MRY4 1105 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 HACD1B0YJ81 288 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 J3KR12 359 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 PDE2AO00408 941 aaPredicted RBP12.5□□□□□ -0.41
SDC1-206ENST00000482879 PRAMEF11O60813 436 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 ZMPSTE24O75844 475 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 ATP5BP06576 529 aaKnown RBP12.5□□□□□ -0.41
SDC1-206ENST00000482879 RBP3P10745 1247 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 CD72P21854 359 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 TNFRSF4P43489 277 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 ZXDAP98168 799 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 IL10RBQ08334 325 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 AP1B1Q10567 949 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 GRSF1Q12849 480 aaKnown RBP eCLIP12.5□□□□□ -0.41
SDC1-206ENST00000482879 XRCC4Q13426 336 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 SNX1Q13596 522 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 CCNG2Q16589 344 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 TMEM196Q5HYL7 178 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 DARS2Q6PI48 645 aaKnown RBP12.5□□□□□ -0.41
SDC1-206ENST00000482879 ZNF852Q6ZMS4 543 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 LEKR1Q6ZMV7 388 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 SFTPA1Q8IWL2 248 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 PRELID2Q8N945 189 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 UCMAQ8WVF2 138 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 TFB1MQ8WVM0 346 aaKnown RBP12.5□□□□□ -0.41
SDC1-206ENST00000482879 ATG4AQ8WYN0 398 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 ACDQ96AP0 544 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 HDAC11Q96DB2 347 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 SHDQ96IW2 340 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 TSGA13Q96PP4 275 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 HOMER3Q9NSC5 361 aa12.5□□□□□ -0.41
SDC1-206ENST00000482879 GOLGA6L10A0A0M3HER8 536 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 KRBA1A5PL33 1030 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 ZSCAN5CA6NGD5 496 aaPredicted RBP12.49□□□□□ -0.41
SDC1-206ENST00000482879 SHISA7A6NL88 538 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 LIASO43766 372 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 MAFKO60675 156 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 EGFP01133 1207 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 ASLP04424 464 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 DLDP09622 509 aaKnown RBP12.49□□□□□ -0.41
SDC1-206ENST00000482879 DRD1P21728 446 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 CCNCP24863 283 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 CTSOP43234 321 aaPredicted RBP12.49□□□□□ -0.41
SDC1-206ENST00000482879 ARF5P84085 180 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 ECT2LQ008S8 904 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 CKAP4Q07065 602 aaKnown RBP12.49□□□□□ -0.41
SDC1-206ENST00000482879 SLC20A2Q08357 652 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 PPIDQ08752 370 aaKnown RBP12.49□□□□□ -0.41
SDC1-206ENST00000482879 EIF4HQ15056 248 aaKnown RBP12.49□□□□□ -0.41
SDC1-206ENST00000482879 WHAMMP3Q1A5X7 153 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 SLC45A4Q5BKX6 768 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 FSTL4Q6MZW2 842 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 TIGD7Q6NT04 549 aaPredicted RBP12.49□□□□□ -0.41
SDC1-206ENST00000482879 RETSATQ6NUM9 610 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 LINGO4Q6UY18 593 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 CDKL3Q8IVW4 592 aaPredicted RBP12.49□□□□□ -0.41
SDC1-206ENST00000482879 CCDC13Q8IYE1 715 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 SIX5Q8N196 739 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 SLC35B2Q8TB61 432 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 CYB5D2Q8WUJ1 264 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 NSMCE1Q8WV22 266 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 SORCS1Q8WY21 1168 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 MAGOHBQ96A72 148 aaKnown RBP12.49□□□□□ -0.41
SDC1-206ENST00000482879 QKIQ96PU8 341 aaKnown RBP eCLIP12.49□□□□□ -0.41
SDC1-206ENST00000482879 C10orf88Q9H8K7 445 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 UBA2Q9UBT2 640 aaPredicted RBP12.49□□□□□ -0.41
SDC1-206ENST00000482879 SLC25A13Q9UJS0 675 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 DNPEPQ9ULA0 475 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 NDRG2Q9UN36 371 aaKnown RBP12.49□□□□□ -0.41
SDC1-206ENST00000482879 PLA2G4CQ9UP65 541 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 ERVW-1Q9UQF0 538 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms