RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 PID1Q7Z2X4 250 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 TMEM135Q86UB9 458 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 KCNMB4Q86W47 210 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 ERO1BQ86YB8 467 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 CCDC117Q8IWD4 279 aaPredicted RBP6.23□□□□□ -1.41
HERC4-209ENST00000473533 PHTF2Q8N3S3 785 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 PCYOX1LQ8NBM8 494 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 KBTBD7Q8WVZ9 684 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 P2RY11Q96G91 374 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 KCTD15Q96SI1 283 aaPredicted RBP6.23□□□□□ -1.41
HERC4-209ENST00000473533 SLC25A23Q9BV35 468 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 GRIP2Q9C0E4 1043 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 RBM38Q9H0Z9 239 aaKnown RBP6.23□□□□□ -1.41
HERC4-209ENST00000473533 ERAP1Q9NZ08 941 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 FZD10Q9ULW2 581 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 ZBTB12Q9Y330 459 aaPredicted RBP6.23□□□□□ -1.41
HERC4-209ENST00000473533 NR2E3Q9Y5X4 410 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 KANSL1LA0AUZ9 987 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 GRAP2O75791 330 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 SRP72O76094 671 aaKnown RBP6.23□□□□□ -1.41
HERC4-209ENST00000473533 CD4P01730 458 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 C2P06681 752 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 MYL3P08590 195 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 ETS2P15036 469 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 YBX3P16989 372 aaKnown RBP eCLIP6.23□□□□□ -1.41
HERC4-209ENST00000473533 SLC7A1P30825 629 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 GRM5P41594 1212 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 GRIA2P42262 883 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 MAGEA8P43361 318 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 RPL34P49207 117 aaKnown RBP6.23□□□□□ -1.41
HERC4-209ENST00000473533 RGS7P49802 495 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 SLC12A2P55011 1212 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 DNAJB13P59910 316 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 CDH17Q12864 832 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 TRIM25Q14258 630 aaKnown RBP6.23□□□□□ -1.41
HERC4-209ENST00000473533 LPIN1Q14693 890 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 LSM12Q3MHD2 195 aaKnown RBP6.23□□□□□ -1.41
HERC4-209ENST00000473533 SLC9B1Q4ZJI4 515 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 SH3D19Q5HYK7 790 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 CELF3Q5SZQ8 465 aaKnown RBP6.23□□□□□ -1.41
HERC4-209ENST00000473533 EEF1DP3Q658K8 133 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 FBXL19Q6PCT2 694 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 GPR141Q7Z602 305 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 ZNF554Q86TJ5 538 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 RNF139Q8WU17 664 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 ARNTL2Q8WYA1 636 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 RCN3Q96D15 328 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 ZNF597Q96LX8 424 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 GPR20Q99678 358 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 GPR22Q99680 433 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 TRMOQ9BU70 441 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 C11orf84Q9BUA3 381 aaPredicted RBP6.23□□□□□ -1.41
HERC4-209ENST00000473533 GATA5Q9BWX5 397 aaPredicted RBP6.23□□□□□ -1.41
HERC4-209ENST00000473533 YTHDF1Q9BYJ9 559 aaKnown RBP6.23□□□□□ -1.41
HERC4-209ENST00000473533 RNPEPQ9H4A4 650 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 COPS7BQ9H9Q2 264 aaPredicted RBP6.23□□□□□ -1.41
HERC4-209ENST00000473533 CLK4Q9HAZ1 481 aaKnown RBP6.23□□□□□ -1.41
HERC4-209ENST00000473533 CASS4Q9NQ75 786 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 TBC1D23Q9NUY8 699 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 IPO11Q9UI26 975 aaKnown RBP6.23□□□□□ -1.41
HERC4-209ENST00000473533 ACOT9Q9Y305 439 aa6.23□□□□□ -1.41
HERC4-209ENST00000473533 SPDYE16A6NNV3 312 aaPredicted RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 G3V2L1 256 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 EEF2KO00418 725 aaKnown RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 CFLARO15519 480 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 PAPSS1O43252 624 aaPredicted RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 ZBTB14O43829 449 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 GPC4O75487 556 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 VAPBO95292 243 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 PIGNO95427 931 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 YY1P25490 414 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 HMOX2P30519 316 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 NOS2P35228 1153 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 SULT1E1P49888 294 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 THOP1P52888 689 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 NRLP54845 237 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 RHDQ02161 417 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 MYBPC3Q14896 1274 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 CA9Q16790 459 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 SH3PXD2AQ5TCZ1 1133 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 BSPRYQ5W0U4 402 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 FSTL4Q6MZW2 842 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 DHRS4L2Q6PKH6 230 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 LPCAT2Q7L5N7 544 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 SLC22A9Q8IVM8 553 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 ZNF420Q8TAQ5 688 aaPredicted RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 PNPT1Q8TCS8 783 aaKnown RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 NTAN1Q96AB6 310 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 ROPN1LQ96C74 230 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 KIF12Q96FN5 646 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 TSPAN17Q96FV3 270 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 VPS39Q96JC1 886 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 VPS50Q96JG6 964 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 ASB2Q96Q27 587 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 WRNIP1Q96S55 665 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 TRIM62Q9BVG3 475 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 TRPV6Q9H1D0 765 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 SPAG4Q9NPE6 437 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 ZNF277Q9NRM2 450 aaPredicted RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 C20orf96Q9NUD7 363 aaPredicted RBP6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms