RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 AIF1P55008 147 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 TMED2Q15363 201 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 NT5DC4Q86YG4 428 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 PPM1KQ8N3J5 372 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 ELMO2Q96JJ3 720 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 CCDC115Q96NT0 180 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 CNPY3Q9BT09 278 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 TEKT3Q9BXF9 490 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 NUF2Q9BZD4 464 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 DTNAQ9Y4J8 743 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 A0A087WXM4 84 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 TCRBV7S3A2A0A539 114 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 TNPO2O14787 897 aaKnown RBP5.46□□□□□ -1.54
SYNE1-220ENST00000471834 ADCY6O43306 1168 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 GAS2O43903 313 aaKnown RBP5.46□□□□□ -1.54
SYNE1-220ENST00000471834 HPRP00739 348 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 F9P00740 461 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 APOA4P06727 396 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 BGNP21810 368 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 CHRNEQ04844 493 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 AAK1Q2M2I8 961 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 TSTD2Q5T7W7 516 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 SLFN12LQ6IEE8 588 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 FAM43BQ6ZT52 329 aaPredicted RBP5.46□□□□□ -1.54
SYNE1-220ENST00000471834 PIWIL4Q7Z3Z4 852 aaKnown RBP5.46□□□□□ -1.54
SYNE1-220ENST00000471834 GDPD5Q8WTR4 605 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 DEPDC1BQ8WUY9 529 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 FAM151AQ8WW52 585 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 POMGNT1Q8WZA1 660 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 FAM111AQ96PZ2 611 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 TSPAN18Q96SJ8 248 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 GRIP2Q9C0E4 1043 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 ANLNQ9NQW6 1124 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 NCKIPSDQ9NZQ3 722 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 FNIP2Q9P278 1114 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 MAGEB16A2A368 324 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 POLRMTO00411 1230 aaKnown RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 MT-ND3P03897 115 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CFHP08603 1231 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CCDC159P0C7I6 412 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ASPAP45381 313 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 GLUD2P49448 558 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 THOP1P52888 689 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 C19orf57Q0VDD7 668 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 TSTA3Q13630 321 aaPredicted RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 TAF1CQ15572 869 aaPredicted RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 TOR1AIP1Q5JTV8 583 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 SLC27A3Q5K4L6 730 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 HP1BP3Q5SSJ5 553 aaPredicted RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 KIAA0319Q5VV43 1072 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ZC3H18Q86VM9 953 aaKnown RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 PHTF2Q8N3S3 785 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CHTF18Q8WVB6 975 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ROPN1LQ96C74 230 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 RAD9AQ99638 391 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 SLC29A1Q99808 456 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 RHOBTB2Q9BYZ6 727 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 PARVBQ9HBI1 364 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 SCHIP1Q9P0W5 487 aaPredicted RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ANKRD6Q9Y2G4 727 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 NEUROG3Q9Y4Z2 214 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 PCDHGA7Q9Y5G6 932 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CDY2AQ9Y6F7 541 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CDY1Q9Y6F8 540 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 PSME4Q14997 1843 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 WDR91A4D1P6 747 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CXorf49A8MYA2 514 aaPredicted RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 KCNQ2O43526 872 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 TNNC2P02585 160 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 RALBP11234 206 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 IDH3AP50213 366 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CXCR4P61073 352 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 TKFCQ3LXA3 575 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CCDC153Q494R4 210 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ZNF362Q5T0B9 420 aaPredicted RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 TTC39BQ5VTQ0 682 aaPredicted RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 NSMFQ6X4W1 530 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 DET1Q7L5Y6 550 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 XYLT1Q86Y38 959 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CTAGE3PQ8IX95 158 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CRYBG2Q8N1P7 616 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 KCNV2Q8TDN2 545 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 LPAR1Q92633 364 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 VTI1BQ9UEU0 232 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 TBK1Q9UHD2 729 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 H0Y3Z8 333 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 TRIM38O00635 465 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 TOM1L1O75674 476 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 P4HA1P13674 534 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 XRCC1P18887 633 aaPredicted RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CCND2P30279 289 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CBX3Q13185 183 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 LGSNQ5TDP6 509 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 C16orf46Q6P387 395 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ZDHHC17Q8IUH5 632 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 IL31RAQ8NI17 732 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 EGLN2Q96KS0 407 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 TEPSINQ96N21 525 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CPXM1Q96SM3 734 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CDH19Q9H159 772 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms