RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 CHD5Q8TDI0 1954 aa9.59□□□□□ -0.87
VPS52-216ENST00000471309 SHROOM3Q8TF72 1996 aa9.59□□□□□ -0.87
VPS52-216ENST00000471309 A0A1W2PRU2 124 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 GFRA2O00451 464 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 RASGRF2O14827 1237 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 PSMD3O43242 534 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 XYLBO75191 536 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 CPP00450 1065 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 JCHAINP01591 159 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 GSTA2P09210 222 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 MYL4P12829 197 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 EPCAMP16422 314 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 PTPN2P17706 415 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 ELK3P41970 407 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 GPX6P59796 221 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 CBX1P83916 185 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 SERINC3Q13530 473 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 HNRNPDQ14103 355 aaKnown RBP9.58□□□□□ -0.88
VPS52-216ENST00000471309 PRPSAP1Q14558 356 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 POLD3Q15054 466 aaPredicted RBP9.58□□□□□ -0.88
VPS52-216ENST00000471309 RAB30Q15771 203 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 FAM182AQ5T1J6 154 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 C6orf118Q5T5N4 469 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 KCTD11Q693B1 232 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 ZNF783Q6ZMS7 281 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 HTR3DQ70Z44 454 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 SETD3Q86TU7 594 aaPredicted RBP9.58□□□□□ -0.88
VPS52-216ENST00000471309 CFAP52Q8N1V2 620 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 AGGF1Q8N302 714 aaeCLIP9.58□□□□□ -0.88
VPS52-216ENST00000471309 RIBC1Q8N443 379 aaPredicted RBP9.58□□□□□ -0.88
VPS52-216ENST00000471309 TEX26Q8N6G2 289 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 CNTD1Q8N815 330 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 PDCD7Q8N8D1 485 aaKnown RBP9.58□□□□□ -0.88
VPS52-216ENST00000471309 HJURPQ8NCD3 748 aaPredicted RBP9.58□□□□□ -0.88
VPS52-216ENST00000471309 UHMK1Q8TAS1 419 aaKnown RBP9.58□□□□□ -0.88
VPS52-216ENST00000471309 SHKBP1Q8TBC3 707 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 EPS8L3Q8TE67 593 aaKnown RBP9.58□□□□□ -0.88
VPS52-216ENST00000471309 NSMCE1Q8WV22 266 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 ZNF419Q96HQ0 510 aaPredicted RBP9.58□□□□□ -0.88
VPS52-216ENST00000471309 ZNF599Q96NL3 588 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 AGAP3Q96P47 875 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 FCRL5Q96RD9 977 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 MLPHQ9BV36 600 aaPredicted RBP9.58□□□□□ -0.88
VPS52-216ENST00000471309 MAGEH1Q9H213 219 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 LRRC40Q9H9A6 602 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 VPS37BQ9H9H4 285 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 PDFQ9HBH1 243 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 LGALS13Q9UHV8 139 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 ZMYM5Q9UJ78 669 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 LSM7Q9UK45 103 aaKnown RBP9.58□□□□□ -0.88
VPS52-216ENST00000471309 ARHGAP26Q9UNA1 814 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 ZNF510Q9Y2H8 683 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 TBC1D30Q9Y2I9 924 aa9.58□□□□□ -0.88
VPS52-216ENST00000471309 AAR2Q9Y312 384 aaKnown RBP9.58□□□□□ -0.88
VPS52-216ENST00000471309 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.57□□□□□ -0.88
VPS52-216ENST00000471309 EXOC1LA0A1B0GW35 172 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 ILVBLA1L0T0 632 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 TYW5A2RUC4 315 aaKnown RBP9.57□□□□□ -0.88
VPS52-216ENST00000471309 F5H423 210 aaPredicted RBP9.57□□□□□ -0.88
VPS52-216ENST00000471309 AP3B1O00203 1094 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 POLR3GO15318 223 aaPredicted RBP9.57□□□□□ -0.88
VPS52-216ENST00000471309 PRAMEF11O60813 436 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 CDH16O75309 829 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 AVILO75366 819 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 RFPL2O75678 378 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 ANXA9O76027 345 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 PAPLNO95428 1278 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 AGTP01019 485 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 HLA-DQB2P05538 268 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 SSTR1P30872 391 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 ETFBP38117 255 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 PBX2P40425 430 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 CCR2P41597 374 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 MMP13P45452 471 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 RENBPP51606 427 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 SGSHP51688 502 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 RPS24P62847 133 aaKnown RBP9.57□□□□□ -0.88
VPS52-216ENST00000471309 ZXDBP98169 803 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 GNA12Q03113 381 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 ZNF177Q13360 481 aaPredicted RBP9.57□□□□□ -0.88
VPS52-216ENST00000471309 RASA2Q15283 850 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 LONRF1Q17RB8 773 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 KLHL38Q2WGJ6 581 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 ARHGAP15Q53QZ3 475 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 TNFAIP8L3Q5GJ75 292 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 HP1BP3Q5SSJ5 553 aaPredicted RBP9.57□□□□□ -0.88
VPS52-216ENST00000471309 STXBP5Q5T5C0 1151 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 TDRPQ86YL5 185 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 CCNJLQ8IV13 435 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 IGDCC3Q8IVU1 814 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 PALM2Q8IXS6 379 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 CPXM2Q8N436 756 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 MAB21L3Q8N8X9 362 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 FAM76AQ8TAV0 307 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 USP33Q8TEY7 942 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 ARHGEF2Q92974 986 aaKnown RBP9.57□□□□□ -0.88
VPS52-216ENST00000471309 TLCD1Q96CP7 247 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 SIGLEC10Q96LC7 697 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 SLC46A2Q9BY10 475 aa9.57□□□□□ -0.88
VPS52-216ENST00000471309 PBX4Q9BYU1 374 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms