RNA–Protein interactions for RNA: ENST00000469415.1

MCF2L-221, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 3,027 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-221ENST00000469415 HAS3O00219 553 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 KLF11O14901 512 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 BUD23O43709 281 aaKnown RBP18.18■□□□□ 0.5
MCF2L-221ENST00000469415 ALDH1A2O94788 518 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 GNAT1P11488 350 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 SPRP35270 261 aaPredicted RBP18.18■□□□□ 0.5
MCF2L-221ENST00000469415 GPR15P49685 360 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 ITGA7Q13683 1181 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 SPDYAQ5MJ70 313 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 SLC41A1Q8IVJ1 513 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 ULK2Q8IYT8 1036 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 URGCPQ8TCY9 931 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 MAPK15Q8TD08 544 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 VPS39Q96JC1 886 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 FICDQ9BVA6 458 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 DCDC2Q9UHG0 476 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 NVLO15381 856 aaKnown RBP18.18■□□□□ 0.5
MCF2L-221ENST00000469415 SERPINE1P05121 402 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 ARSAP15289 507 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 LRPAP1P30533 357 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 LHX1P48742 406 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 CXCR3P49682 368 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 CUL3Q13618 768 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 ESRP1Q6NXG1 681 aaKnown RBP18.18■□□□□ 0.5
MCF2L-221ENST00000469415 LDB1Q86U70 411 aaPredicted RBP18.18■□□□□ 0.5
MCF2L-221ENST00000469415 SMARCD1Q96GM5 515 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 SORT1Q99523 831 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 RTP3Q9BQQ7 232 aa18.18■□□□□ 0.5
MCF2L-221ENST00000469415 CAPN14A8MX76 684 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 SIN3BO75182 1162 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 MLNP12872 115 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 MPSTP25325 297 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 CTGFP29279 349 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 EPHA3P29320 983 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 RPL34P49207 117 aaKnown RBP18.17■□□□□ 0.5
MCF2L-221ENST00000469415 IDH3AP50213 366 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 DDR2Q16832 855 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 SLC9B1Q4ZJI4 515 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 XKR4Q5GH76 650 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 STEAP4Q687X5 459 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 SPDL1Q96EA4 605 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 ZIC5Q96T25 663 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 CNGB3Q9NQW8 809 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 MT-CO1P00395 513 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 NAGLUP54802 743 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 ABCE1P61221 599 aaKnown RBP18.17■□□□□ 0.5
MCF2L-221ENST00000469415 CNGA3Q16281 694 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 BTBD8Q5XKL5 378 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 TMPRSS6Q8IU80 811 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 KCTD13Q8WZ19 329 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 KLHL5Q96PQ7 755 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 PANX3Q96QZ0 392 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 NDNQ99608 321 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 RBBP8Q99708 897 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 DDX50Q9BQ39 737 aaKnown RBP18.17■□□□□ 0.5
MCF2L-221ENST00000469415 COG4Q9H9E3 785 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 IGSF9Q9P2J2 1179 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 PLA2G4CQ9UP65 541 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 AURKAO14965 403 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 CFLARO15519 480 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 CIB2O75838 187 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 TBX18O95935 607 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 GSTA2P09210 222 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 MX2P20592 715 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 PLK1P53350 603 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 TMEM198Q66K66 360 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 PDPK2PQ6A1A2 396 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 SNX31Q8N9S9 440 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 OR52B2Q96RD2 323 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 CCDC106Q9BWC9 280 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 NUF2Q9BZD4 464 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 CYP4F12Q9HCS2 524 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 TRMT13Q9NUP7 481 aaKnown RBP18.17■□□□□ 0.5
MCF2L-221ENST00000469415 STOML1Q9UBI4 398 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 TLK1Q9UKI8 766 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 TRPV2Q9Y5S1 764 aa18.17■□□□□ 0.5
MCF2L-221ENST00000469415 NEMP2A6NFY4 417 aa18.16■□□□□ 0.5
MCF2L-221ENST00000469415 AIM2O14862 343 aa18.16■□□□□ 0.5
MCF2L-221ENST00000469415 PAGE1O75459 146 aa18.16■□□□□ 0.5
MCF2L-221ENST00000469415 PPIDQ08752 370 aaKnown RBP18.16■□□□□ 0.5
MCF2L-221ENST00000469415 OVOS1Q6IE37 1185 aa18.16■□□□□ 0.5
MCF2L-221ENST00000469415 MIB1Q86YT6 1006 aa18.16■□□□□ 0.5
MCF2L-221ENST00000469415 ATPAF2Q8N5M1 289 aa18.16■□□□□ 0.5
MCF2L-221ENST00000469415 SLC26A7Q8TE54 656 aa18.16■□□□□ 0.5
MCF2L-221ENST00000469415 CASP10Q92851 521 aa18.16■□□□□ 0.5
MCF2L-221ENST00000469415 CPNE1Q99829 537 aa18.16■□□□□ 0.5
MCF2L-221ENST00000469415 SLC38A7Q9NVC3 462 aa18.16■□□□□ 0.5
MCF2L-221ENST00000469415 RCOR3Q9P2K3 495 aaPredicted RBP18.16■□□□□ 0.5
MCF2L-221ENST00000469415 RUVBL2Q9Y230 463 aaKnown RBP18.16■□□□□ 0.5
MCF2L-221ENST00000469415 MYCP01106 439 aaPredicted RBP18.16■□□□□ 0.5
MCF2L-221ENST00000469415 ETFBP38117 255 aa18.16■□□□□ 0.5
MCF2L-221ENST00000469415 PDCD2Q16342 344 aaPredicted RBP18.16■□□□□ 0.5
MCF2L-221ENST00000469415 SPANXN3Q5MJ09 141 aa18.16■□□□□ 0.5
MCF2L-221ENST00000469415 C14orf80Q86SX3 495 aa18.16■□□□□ 0.5
MCF2L-221ENST00000469415 ZSCAN18Q8TBC5 510 aaPredicted RBP18.16■□□□□ 0.5
MCF2L-221ENST00000469415 MIEF2Q96C03 454 aa18.16■□□□□ 0.5
MCF2L-221ENST00000469415 PABPC5Q96DU9 382 aaKnown RBP18.16■□□□□ 0.5
MCF2L-221ENST00000469415 FCRL2Q96LA5 508 aaPredicted RBP18.16■□□□□ 0.5
MCF2L-221ENST00000469415 KATNAL1Q9BW62 490 aa18.16■□□□□ 0.5
MCF2L-221ENST00000469415 BRD8Q9H0E9 1235 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms