RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 TBC1D3DA0A087WVF3 549 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 TBC1D3IA0A087WXS9 549 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 TBC1D3EA0A087X179 549 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 TBC1D3KA0A087X1G2 549 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 A0A1B0GTQ1 180 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 A0A1W2PR77 199 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 TBC1D3FA6NER0 549 aaPredicted RBP17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 DRGXA6NNA5 263 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 TBC1D3LB9A6J9 549 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 C1QTNF3-AMACRE9PGA6 284 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 F8VZ95 297 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 I6L893 689 aaPredicted RBP17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 MCF2LO15068 1137 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 LATO43561 262 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 RHOCP08134 193 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 ATXN1LP0C7T5 689 aaKnown RBP17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 TBC1D3HP0C7X1 549 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 METAP1P53582 386 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 KRT83P78385 493 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 INAVAQ3KP66 663 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 ALFQ53S48 1182 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 TBC1D3GQ6DHY5 549 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 TBC1D3CQ6IPX1 549 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 LRRC31Q6UY01 552 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 CCNI2Q6ZMN8 369 aaPredicted RBP17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 Q6ZVU0 165 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 NOP9Q86U38 636 aaKnown RBP17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 TBC1D3Q8IZP1 549 aaPredicted RBP17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 SERAC1Q96JX3 654 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 C1orf74Q96LT6 269 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 PSMB7Q99436 277 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 TAB2Q9NYJ8 693 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 SARDHQ9UL12 918 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 PPM1HQ9ULR3 514 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 HS3ST2Q9Y278 367 aa17.01■□□□□ 0.31
CCDC28B-204ENST00000469003 PLK4O00444 970 aa17■□□□□ 0.31
CCDC28B-204ENST00000469003 TNFSF14O43557 240 aa17■□□□□ 0.31
CCDC28B-204ENST00000469003 PLRG1O43660 514 aaKnown RBP17■□□□□ 0.31
CCDC28B-204ENST00000469003 SRCP12931 536 aa17■□□□□ 0.31
CCDC28B-204ENST00000469003 FLT3P36888 993 aa17■□□□□ 0.31
CCDC28B-204ENST00000469003 PPP2CBP62714 309 aa17■□□□□ 0.31
CCDC28B-204ENST00000469003 PPP2CAP67775 309 aa17■□□□□ 0.31
CCDC28B-204ENST00000469003 NOMO3P69849 1222 aa17■□□□□ 0.31
CCDC28B-204ENST00000469003 IL9RQ01113 521 aa17■□□□□ 0.31
CCDC28B-204ENST00000469003 SLC45A4Q5BKX6 768 aa17■□□□□ 0.31
CCDC28B-204ENST00000469003 CLEC17AQ6ZS10 378 aa17■□□□□ 0.31
CCDC28B-204ENST00000469003 BNIPLQ7Z465 357 aa17■□□□□ 0.31
CCDC28B-204ENST00000469003 SETD3Q86TU7 594 aaPredicted RBP17■□□□□ 0.31
CCDC28B-204ENST00000469003 PIP4K2CQ8TBX8 421 aa17■□□□□ 0.31
CCDC28B-204ENST00000469003 ENOX1Q8TC92 643 aaKnown RBP17■□□□□ 0.31
CCDC28B-204ENST00000469003 EPS8L1Q8TE68 723 aa17■□□□□ 0.31
CCDC28B-204ENST00000469003 ELF4Q99607 663 aaPredicted RBP17■□□□□ 0.31
CCDC28B-204ENST00000469003 C2orf49Q9BVC5 232 aaPredicted RBP17■□□□□ 0.31
CCDC28B-204ENST00000469003 VPS51Q9UID3 782 aa17■□□□□ 0.31
CCDC28B-204ENST00000469003 TMEM59LQ9UK28 342 aa17■□□□□ 0.31
CCDC28B-204ENST00000469003 SNX10Q9Y5X0 201 aa17■□□□□ 0.31
CCDC28B-204ENST00000469003 GCN1Q92616 2671 aaKnown RBP16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 DOCK4Q8N1I0 1966 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 ITPR1Q14643 2758 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 COL5A1P20908 1838 aaPredicted RBP16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 IGLV3-10A0A075B6K4 115 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 GOLGA8SH3BPF8 625 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 WNT9AO14904 365 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 SNAP91O60641 907 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 RTN2O75298 545 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 CAPNS1P04632 268 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 MMEP08473 750 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 ZNF18P17022 549 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 NUDT1P36639 197 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 SCAPQ12770 1279 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 CNTN1Q12860 1018 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 C2CD6Q53TS8 623 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 AGBL4Q5VU57 503 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 NAA35Q5VZE5 725 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 NAPEPLDQ6IQ20 393 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 TRNP1Q6NT89 227 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 ARCQ7LC44 396 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 TMPRSS7Q7RTY8 843 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 PRPF39Q86UA1 669 aaKnown RBP16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 TRIM69Q86WT6 500 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 ZNF677Q86XU0 584 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 DCAF4L2Q8NA75 395 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 CPA5Q8WXQ8 436 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 GANQ9H2C0 597 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 GDF3Q9NR23 364 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 TMPRSS4Q9NRS4 437 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 LMBRD1Q9NUN5 540 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 ARHGAP20Q9P2F6 1191 aa16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 FARP1Q9Y4F1 1045 aaPredicted RBP16.99■□□□□ 0.31
CCDC28B-204ENST00000469003 SETXQ7Z333 2677 aaKnown RBP16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 FAM170AA1A519 330 aa16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 GOLGA8CPA6NN73 597 aa16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 E9PAM4 449 aa16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 TLR4O00206 839 aa16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 YKT6O15498 198 aa16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 BNIP3LO60238 219 aa16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 MT-CO1P00395 513 aa16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 PRAMEF14Q5SWL7 426 aa16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 C6orf118Q5T5N4 469 aa16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 CDKAL1Q5VV42 579 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms