RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 PMS2P11Q13670 270 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 POLD3Q15054 466 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 CNN3Q15417 329 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 ADIPOQQ15848 244 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 CNGA3Q16281 694 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 TSTQ16762 297 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 KRT71Q3SY84 523 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 KBTBD12Q3ZCT8 623 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 SLC44A4Q53GD3 710 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 CEP78Q5JTW2 689 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 TEDDM1Q5T9Z0 273 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 DCLRE1AQ6PJP8 1040 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 SLC2A7Q6PXP3 512 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 SLFN11Q7Z7L1 901 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 NEK8Q86SG6 692 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 USP37Q86T82 979 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 FAM90A1Q86YD7 464 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 RPAP2Q8IXW5 612 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 MIER2Q8N344 545 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 TMCO5AQ8N6Q1 288 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 FAM46DQ8NEK8 389 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 CEP76Q8TAP6 659 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 ETNPPLQ8TBG4 499 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 PIGOQ8TEQ8 1089 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 NOC3LQ8WTT2 800 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 KRT35Q92764 455 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 ZUFSPQ96AP4 578 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 REPS1Q96D71 796 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 MVB12AQ96EY5 273 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 C8orf76Q96K31 380 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 FCRL4Q96PJ5 515 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 ATP6V0BQ99437 205 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 HERC2P3Q9BVR0 1158 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 TRIM5Q9C035 493 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 TTYH3Q9C0H2 523 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 C1orf21Q9H246 121 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 MRPL46Q9H2W6 279 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 DONSONQ9NYP3 566 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 UBA2Q9UBT2 640 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 PCDHGB4Q9UN71 923 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 DDX49Q9Y6V7 483 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 V9GYY5 206 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 ZNF521Q96K83 1311 aa5.11□□□□□ -1.59
CCDC88A-210ENST00000468534 CTAGE9A4FU28 777 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 SYT5O00445 386 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 ZNF213O14771 459 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 RNF113AO15541 343 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 ZNF254O75437 659 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 DAB1O75553 588 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 LATS1O95835 1130 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 AHSGP02765 367 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 IGKV2-30P06310 120 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 RHOXF2BP0C7M4 288 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 IFNAR1P17181 557 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 PTPN2P17706 415 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 ENGP17813 658 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 ARF4P18085 180 aaPredicted RBP5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 MAPK4P31152 587 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 CYP2C18P33260 490 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 KRT2P35908 639 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 EEFSECP57772 596 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 VAMP2P63027 116 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 HTD2P86397 168 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 ACTN3Q08043 901 aaPredicted RBP5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 ZNF618Q5T7W0 954 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 SLC18B1Q6NT16 456 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 C11orf87Q6NUJ2 197 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 NAPRTQ6XQN6 538 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 RGS9BPQ6ZS82 235 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 C15orf52Q6ZUT6 534 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 CCDC80Q76M96 950 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 PIWIL3Q7Z3Z3 882 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 MAVSQ7Z434 540 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 HEATR3Q7Z4Q2 680 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 MOGAT3Q86VF5 341 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 KRT73Q86Y46 540 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 FAM109AQ8N4B1 249 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 KCTD6Q8NC69 237 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 ANKRD20A12PQ8NF67 263 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 SPPL3Q8TCT6 385 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 RNF139Q8WU17 664 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 TBC1D5Q92609 795 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 NRBF2Q96F24 287 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 DHTKD1Q96HY7 919 aaPredicted RBP5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 RHOXF2Q9BQY4 288 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 CAPS2Q9BXY5 557 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 TAOK3Q9H2K8 898 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 CRLF2Q9HC73 371 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 PDE11AQ9HCR9 933 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 TM9SF3Q9HD45 589 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 SERTAD3Q9UJW9 196 aa5.1□□□□□ -1.59
CCDC88A-210ENST00000468534 NSD2O96028 1365 aa5.09□□□□□ -1.59
CCDC88A-210ENST00000468534 POM121BA6NF01 834 aa5.09□□□□□ -1.59
CCDC88A-210ENST00000468534 LGALS16A8MUM7 142 aa5.09□□□□□ -1.59
CCDC88A-210ENST00000468534 PPP6CO00743 305 aa5.09□□□□□ -1.59
CCDC88A-210ENST00000468534 NPC1O15118 1278 aa5.09□□□□□ -1.59
CCDC88A-210ENST00000468534 SYNCRIPO60506 623 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-210ENST00000468534 PLA2G6O60733 806 aa5.09□□□□□ -1.59
CCDC88A-210ENST00000468534 NOL3O60936 208 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-210ENST00000468534 KERAO60938 352 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms