RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 EPHX2P34913 555 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 L3MBTL3Q96JM7 780 aaPredicted RBP19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 TCRBV9S1A1TA0A576 114 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 KPNA6O60684 536 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 THPOP40225 353 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 UBAP2LQ14157 1087 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 POLD3Q15054 466 aaPredicted RBP19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 SPANXN2Q5MJ10 180 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 ZNF618Q5T7W0 954 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 C19orf60Q96EN9 201 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 C7orf26Q96N11 449 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 OSBPL7Q9BZF2 842 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 DDX4Q9NQI0 724 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 AP4B1Q9Y6B7 739 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 TBKBP1A7MCY6 615 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 LACTBL1A8MY62 500 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 ZMPSTE24O75844 475 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 CPSF4O95639 269 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 ADSSP30520 456 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 SFSWAPQ12872 951 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 TIMM50Q3ZCQ8 353 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 CWF19L1Q69YN2 538 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 TDRPQ86YL5 185 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 TIMMDC1Q9NPL8 285 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 CACNA2D2Q9NY47 1150 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 PSMD13Q9UNM6 376 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 PRG3Q9Y2Y8 225 aaPredicted RBP19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 BAZ2BQ9UIF8 2168 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 MGAT4DA6NG13 374 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 CALCAP01258 141 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 CYP2C18P33260 490 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 PIGWQ7Z7B1 504 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 SLC44A2Q8IWA5 706 aaPredicted RBP19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 SCUBE3Q8IX30 993 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 TMEM132CQ8N3T6 1108 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 SFRP1Q8N474 314 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 ZNF276Q8N554 614 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 S100A14Q9HCY8 104 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 TMEM150BA6NC51 233 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 DNM1LO00429 736 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 WNT7AO00755 349 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 TM7SF2O76062 418 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 RECQL5O94762 991 aaPredicted RBP19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 VTNP04004 478 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 HADHBP55084 474 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 ZACNQ401N2 412 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 ALYREFQ86V81 257 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 MFSD14AQ96MC6 490 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 SYT15Q9BQS2 421 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 FHDC1Q9C0D6 1143 aaPredicted RBP19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 CLK4Q9HAZ1 481 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 POPDC2Q9HBU9 364 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 LRRC4CQ9HCJ2 640 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 EGFRP00533 1210 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 BPGMP07738 259 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 PIK3CGP48736 1102 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 SLC5A9Q2M3M2 681 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 FBXO32Q969P5 355 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 ACTR8Q9H981 624 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 DUSP12Q9UNI6 340 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 ALOX15P16050 662 aaPredicted RBP19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 SLC16A1P53985 500 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 JAM2P57087 298 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 ITGADQ13349 1161 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 STARD8Q92502 1023 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 TCF12Q99081 682 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 ACOX2Q99424 681 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 REXO4Q9GZR2 422 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 NMRK2Q9NPI5 230 aa19.29■□□□□ 0.68
CCDC88B-204ENST00000463837 A0A1W2PPM1 405 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 PIAS1O75925 651 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 AXLP30530 894 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 INAQ16352 499 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 LIPMQ5VYY2 423 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 FAM228AQ86W67 206 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 FITM2Q8N6M3 262 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 S100ZQ8WXG8 99 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 CELF6Q96J87 481 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 KRT87PA6NCN2 255 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 BANF1O75531 89 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 B3GAT3O94766 335 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 THP07101 528 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 ITGA2BP08514 1039 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 TALDO1P37837 337 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 TAS2R40P59535 323 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 CDH18Q13634 790 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 ZNF467Q7Z7K2 595 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 SLC44A1Q8WWI5 657 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 CAMKK2Q96RR4 588 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 MRIQ9BWK5 157 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 FBXO6Q9NRD1 293 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 STK39Q9UEW8 545 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 MFN2O95140 757 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 VAV1P15498 845 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 CLCN5P51795 746 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 NAGLUP54802 743 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 TAF5Q15542 800 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 INSCQ1MX18 579 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 ZNF410Q86VK4 478 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 PQLC1Q8N2U9 271 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms