RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 ATP11CQ8NB49 1132 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.25■□□□□ 0.83
COL9A3-204ENST00000463487 UBE2Q2Q8WVN8 375 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 ATRIPQ8WXE1 791 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 TSC1Q92574 1164 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 RPL10LQ96L21 214 aaKnown RBP20.25■□□□□ 0.83
COL9A3-204ENST00000463487 PSMB7Q99436 277 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 MAK16Q9BXY0 300 aaKnown RBP20.25■□□□□ 0.83
COL9A3-204ENST00000463487 ACE2Q9BYF1 805 aaPredicted RBP20.25■□□□□ 0.83
COL9A3-204ENST00000463487 PRDM16Q9HAZ2 1276 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 NDFIP2Q9NV92 336 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 ZSCAN32Q9NX65 697 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 EBF1Q9UH73 591 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 FARP1Q9Y4F1 1045 aaPredicted RBP20.25■□□□□ 0.83
COL9A3-204ENST00000463487 HYOU1Q9Y4L1 999 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 PCDHGA2Q9Y5H1 932 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 A0A1W2PQF6 199 aa20.24■□□□□ 0.83
COL9A3-204ENST00000463487 TARSL2A2RTX5 802 aaKnown RBP20.24■□□□□ 0.83
COL9A3-204ENST00000463487 WASH3PC4AMC7 463 aa20.24■□□□□ 0.83
COL9A3-204ENST00000463487 RASA4BC9J798 803 aa20.24■□□□□ 0.83
COL9A3-204ENST00000463487 RASA4O43374 803 aa20.24■□□□□ 0.83
COL9A3-204ENST00000463487 RNASEH1O60930 286 aaKnown RBP20.24■□□□□ 0.83
COL9A3-204ENST00000463487 HNRNPA1L2Q32P51 320 aaKnown RBP20.24■□□□□ 0.83
COL9A3-204ENST00000463487 ATP13A4Q4VNC1 1196 aa20.24■□□□□ 0.83
COL9A3-204ENST00000463487 ZNF662Q6ZS27 426 aa20.24■□□□□ 0.83
COL9A3-204ENST00000463487 LONP2Q86WA8 852 aa20.24■□□□□ 0.83
COL9A3-204ENST00000463487 PRSS33Q8NF86 280 aa20.24■□□□□ 0.83
COL9A3-204ENST00000463487 HMGB4Q8WW32 186 aa20.24■□□□□ 0.83
COL9A3-204ENST00000463487 MRGPRX3Q96LB0 322 aa20.24■□□□□ 0.83
COL9A3-204ENST00000463487 KLHL11Q9NVR0 708 aa20.24■□□□□ 0.83
COL9A3-204ENST00000463487 C2orf42Q9NWW7 574 aa20.24■□□□□ 0.83
COL9A3-204ENST00000463487 SALL4Q9UJQ4 1053 aa20.24■□□□□ 0.83
COL9A3-204ENST00000463487 ARIH1Q9Y4X5 557 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-204ENST00000463487 RAD54BQ9Y620 910 aa20.24■□□□□ 0.83
COL9A3-204ENST00000463487 CACNA1IQ9P0X4 2223 aa20.24■□□□□ 0.83
COL9A3-204ENST00000463487 CCDC66A2RUB6 948 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 H0Y858 1186 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 AXIN1O15169 862 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 KDELR3O43731 214 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 ATP9BO43861 1147 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 SNAP91O60641 907 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 HLA-EP13747 358 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 KDELR1P24390 212 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 CNR2P34972 360 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 ACVRL1P37023 503 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 CETN2P41208 172 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 NUMBP49757 651 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 STK19P49842 368 aaPredicted RBP20.23■□□□□ 0.83
COL9A3-204ENST00000463487 ARSEP51690 589 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 CAMK2GQ13555 558 aaPredicted RBP20.23■□□□□ 0.83
COL9A3-204ENST00000463487 BYSLQ13895 437 aaKnown RBP20.23■□□□□ 0.83
COL9A3-204ENST00000463487 ANKRD20A8PQ5CZ79 823 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 HEATR6Q6AI08 1181 aaKnown RBP20.23■□□□□ 0.83
COL9A3-204ENST00000463487 DSG4Q86SJ6 1040 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 WDR5BQ86VZ2 330 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 SH2D3CQ8N5H7 860 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 CASKIN2Q8WXE0 1202 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 HMCESQ96FZ2 354 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 RBM41Q96IZ5 413 aaKnown RBP20.23■□□□□ 0.83
COL9A3-204ENST00000463487 ALS2CR12Q96Q35 445 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 LRRC19Q9H756 370 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 GUCA1BQ9UMX6 200 aa20.23■□□□□ 0.83
COL9A3-204ENST00000463487 MUC22E2RYF6 1773 aaPredicted RBP20.23■□□□□ 0.83
COL9A3-204ENST00000463487 DCLK1O15075 740 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 CD48P09326 243 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 TDGF1P13385 188 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 ZFXP17010 805 aaPredicted RBP20.22■□□□□ 0.83
COL9A3-204ENST00000463487 AMPD1P23109 780 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 RECQLP46063 649 aaPredicted RBP20.22■□□□□ 0.83
COL9A3-204ENST00000463487 SERPINH1P50454 418 aaKnown RBP20.22■□□□□ 0.83
COL9A3-204ENST00000463487 TCF15Q12870 199 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 SERINC3Q13530 473 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 PEX26Q7Z412 305 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 RASSF3Q86WH2 238 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 LRRC49Q8IUZ0 686 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 KATNAL2Q8IYT4 538 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 UBL4BQ8N7F7 174 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 OR2T3Q8NH03 318 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 ATOH1Q92858 354 aaPredicted RBP20.22■□□□□ 0.83
COL9A3-204ENST00000463487 MYO19Q96H55 970 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 SPACA7Q96KW9 195 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 CEP44Q9C0F1 390 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 GOLPH3Q9H4A6 298 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 SP110Q9HB58 689 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 POLR3BQ9NW08 1133 aaPredicted RBP20.22■□□□□ 0.83
COL9A3-204ENST00000463487 TRIM10Q9UDY6 481 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 SLCO3A1Q9UIG8 710 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 AMFRQ9UKV5 643 aa20.22■□□□□ 0.83
COL9A3-204ENST00000463487 GRID2IPA4D2P6 1211 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 TTC34A8MYJ7 566 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 MIF4GDA9UHW6 222 aaKnown RBP20.21■□□□□ 0.83
COL9A3-204ENST00000463487 DFFAO00273 331 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 PALMO75781 387 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 ZMPSTE24O75844 475 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 ZRANB2O95218 330 aaKnown RBP eCLIP20.21■□□□□ 0.83
COL9A3-204ENST00000463487 ACADMP11310 421 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 SRCP12931 536 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 COL9A1P20849 921 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 CTNNA1P35221 906 aaKnown RBP20.21■□□□□ 0.83
COL9A3-204ENST00000463487 FNTBP49356 437 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms