RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 CEP76Q8TAP6 659 aa13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 IQCDQ96DY2 449 aa13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 SPON2Q9BUD6 331 aa13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 C2orf49Q9BVC5 232 aaPredicted RBP13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 NUSAP1Q9BXS6 441 aaKnown RBP13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 BTBD1Q9H0C5 482 aa13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 ISCUQ9H1K1 167 aa13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 NEUROG2Q9H2A3 272 aa13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 C6orf106Q9H6K1 298 aaPredicted RBP13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 FSCN3Q9NQT6 498 aa13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 NDFIP2Q9NV92 336 aa13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 FBXL12Q9NXK8 326 aa13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 SERGEFQ9UGK8 458 aa13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 ADAMTS1Q9UHI8 967 aa13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 VPS51Q9UID3 782 aa13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 SCML1Q9UN30 329 aa13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 SLC6A14Q9UN76 642 aa13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 HS3ST2Q9Y278 367 aa13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 NCKAP1Q9Y2A7 1128 aa13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 LUC7L2Q9Y383 392 aaKnown RBP13.06□□□□□ -0.32
PRPF40A-203ENST00000448428 TMEM191CA6NGB0 347 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 C4orf47A7E2U8 309 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 MEI4A8MW99 385 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 SMAD6O43541 496 aaKnown RBP13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 ZMPSTE24O75844 475 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 SEMA4FO95754 770 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 IL1BP01584 269 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 SERPING1P05155 500 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 SERPINF2P08697 491 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 RHOQP17081 205 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 CASP14P31944 242 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 L1CAMP32004 1257 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 GNA12Q03113 381 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 ELAVL3Q14576 367 aaKnown RBP13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 TDRD12Q587J7 1177 aaKnown RBP13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 LINGO4Q6UY18 593 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 ZNF783Q6ZMS7 281 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 TMC6Q7Z403 805 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 NLRP14Q86W24 1093 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 AADATQ8N5Z0 425 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 ARFGAP1Q8N6T3 406 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 DCAF4L2Q8NA75 395 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 ATP11CQ8NB49 1132 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 GANCQ8TET4 914 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 TBC1D31Q96DN5 1066 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 TRIM7Q9C029 511 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 PCED1AQ9H1Q7 454 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 RETREG1Q9H6L5 497 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 SGK2Q9HBY8 427 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 CAPN10Q9HC96 672 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 CNOT8Q9UFF9 292 aaKnown RBP13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 DNAI1Q9UI46 699 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 SARDHQ9UL12 918 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 FZD10Q9ULW2 581 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 NEU3Q9UQ49 428 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 PCDH15Q96QU1 1955 aa13.05□□□□□ -0.32
PRPF40A-203ENST00000448428 A0A1W2PP55 124 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 CBX4O00257 560 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 MCF2LO15068 1137 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 RNASEH2AO75792 299 aaKnown RBP13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 GOT1P17174 413 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 ENGP17813 658 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 C5AR1P21730 350 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 PSMA2P25787 234 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 PSMD8P48556 350 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 GALCP54803 685 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 GFPT1Q06210 699 aaPredicted RBP13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 ZNF252P-AS1Q0IIN9 211 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 SFSWAPQ12872 951 aaKnown RBP13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 EFHC2Q5JST6 749 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 IL31Q6EBC2 164 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 Q6ZVU0 165 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 RABEPKQ7Z6M1 372 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 HDDC3Q8N4P3 179 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 RNF214Q8ND24 703 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 C1orf216Q8TAB5 229 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 OR8D1Q8WZ84 308 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 ZNF653Q96CK0 615 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 OMDQ99983 421 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 ACE2Q9BYF1 805 aaPredicted RBP13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 MIR1-1HGQ9H1L0 117 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 ATP13A1Q9HD20 1204 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 TMEM9BQ9NQ34 198 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 TMEM248Q9NWD8 314 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 MYO1AQ9UBC5 1043 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 EIF2B4Q9UI10 523 aaKnown RBP13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 PPM1HQ9ULR3 514 aa13.04□□□□□ -0.32
PRPF40A-203ENST00000448428 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.04□□□□□ -0.325e-11■■■■□ 22.7
PRPF40A-203ENST00000448428 A0A087X0T9 212 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 CREB3O43889 395 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 BNIP3LO60238 219 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 ADH1BP00325 375 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 TPM3P06753 285 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 FAM228BP0C875 321 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 MYBL1P10243 752 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 GNSP15586 552 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 DESP17661 470 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 ACVRL1P37023 503 aa13.03□□□□□ -0.32
PRPF40A-203ENST00000448428 MAPK8P45983 427 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms