RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 ATP6V1HQ9UI12 483 aa7.9□□□□□ -1.14
NEDD9-204ENST00000448183 C3orf18Q9UK00 162 aa7.9□□□□□ -1.14
NEDD9-204ENST00000448183 ADAM28Q9UKQ2 775 aa7.9□□□□□ -1.14
NEDD9-204ENST00000448183 AK5Q9Y6K8 562 aa7.9□□□□□ -1.14
NEDD9-204ENST00000448183 NCANO14594 1321 aa7.9□□□□□ -1.14
NEDD9-204ENST00000448183 A0A0A0MRY4 1105 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 LOC100506127A0A0U1RQW1 187 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 PRR23AA6NEV1 266 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 ACKR2O00590 384 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 SNAP91O60641 907 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 SEC24AO95486 1093 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 LTFP02788 710 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 CYP1A2P05177 515 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 TGFB3P10600 412 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 ITGB6P18564 788 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 ATP5F1P24539 256 aaPredicted RBP7.9□□□□□ -1.15
NEDD9-204ENST00000448183 NUMBP49757 651 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 CDH8P55286 799 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 TNK2Q07912 1038 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 MTA1Q13330 715 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 SQLEQ14534 574 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 KLHL12Q53G59 568 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 ATAD3BQ5T9A4 648 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 ZNF280DQ6N043 979 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 LRRC55Q6ZSA7 311 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 ZNF621Q6ZSS3 439 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 TFAP2DQ7Z6R9 452 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 NT5DC4Q86YG4 428 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 CACTIN-AS1Q8N1I8 211 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 TMEM159Q96B96 161 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 SPATA13Q96N96 652 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 TAS2R14Q9NYV8 317 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 EHD3Q9NZN3 535 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 ZNF624Q9P2J8 865 aaPredicted RBP7.9□□□□□ -1.15
NEDD9-204ENST00000448183 GSTK1Q9Y2Q3 226 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 PTPRMP28827 1452 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 RCCD1A6NED2 376 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 E5RJQ4 531 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 HDAC3O15379 428 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 TSPAN3O60637 253 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 VIL1P09327 827 aaKnown RBP7.9□□□□□ -1.15
NEDD9-204ENST00000448183 CCNA2P20248 432 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 RPL22P35268 128 aaKnown RBP7.9□□□□□ -1.15
NEDD9-204ENST00000448183 CCT3P49368 545 aaKnown RBP7.9□□□□□ -1.15
NEDD9-204ENST00000448183 TBX4P57082 545 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 PPP3CAQ08209 521 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 SPIRE1Q08AE8 756 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 ACSM2AQ08AH3 577 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 NR1D2Q14995 579 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 PGM5Q15124 567 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 ACSM2BQ68CK6 577 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 IL27RAQ6UWB1 636 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 SAMD7Q7Z3H4 446 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 POLNQ7Z5Q5 900 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 PSTKQ8IV42 348 aaKnown RBP7.9□□□□□ -1.15
NEDD9-204ENST00000448183 RP9Q8TA86 221 aaKnown RBP7.9□□□□□ -1.15
NEDD9-204ENST00000448183 FBXO30Q8TB52 745 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 KAT5Q92993 513 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 ELMO3Q96BJ8 720 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 MBOAT7Q96N66 472 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 SERPINB11Q96P15 392 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 INPP4AQ96PE3 977 aaPredicted RBP7.9□□□□□ -1.15
NEDD9-204ENST00000448183 FBXO44Q9H4M3 255 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 MROH8Q9H579 483 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 ACSS3Q9H6R3 686 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 ZFYVE28Q9HCC9 887 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 SPAG4Q9NPE6 437 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 VPS45Q9NRW7 570 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 OPTCQ9UBM4 332 aa7.9□□□□□ -1.15
NEDD9-204ENST00000448183 TNPO3Q9Y5L0 923 aaKnown RBP7.9□□□□□ -1.15
NEDD9-204ENST00000448183 CNTNAP2Q9UHC6 1331 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 SIGLEC16A6NMB1 481 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 SPTLC1O15269 473 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 EPN2O95208 641 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 RPLP2P05387 115 aaKnown RBP7.89□□□□□ -1.15
NEDD9-204ENST00000448183 CAPN1P07384 714 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 SERPINA6P08185 405 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 LTA4HP09960 611 aaKnown RBP7.89□□□□□ -1.15
NEDD9-204ENST00000448183 OR1E1P30953 314 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 GRK4P32298 578 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 IFNGR2P38484 337 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 IDH2P48735 452 aaKnown RBP7.89□□□□□ -1.15
NEDD9-204ENST00000448183 MIIPQ5JXC2 388 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 SLC30A10Q6XR72 485 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 PIWIL4Q7Z3Z4 852 aaKnown RBP7.89□□□□□ -1.15
NEDD9-204ENST00000448183 GPSM1Q86YR5 675 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 FBXO16Q8IX29 292 aaPredicted RBP7.89□□□□□ -1.15
NEDD9-204ENST00000448183 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.89□□□□□ -1.151e-6■□□□□ 8.7
NEDD9-204ENST00000448183 PHACTR4Q8IZ21 702 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 AADATQ8N5Z0 425 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 ALLCQ8N6M5 410 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 RTL3Q8N8U3 475 aaKnown RBP7.89□□□□□ -1.15
NEDD9-204ENST00000448183 CERS2Q96G23 380 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 SLCO1B3Q9NPD5 702 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 TLR8Q9NR97 1041 aaKnown RBP7.89□□□□□ -1.15
NEDD9-204ENST00000448183 PNPLA3Q9NST1 481 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 SNTG2Q9NY99 539 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 CRNNQ9UBG3 495 aaPredicted RBP7.89□□□□□ -1.15
NEDD9-204ENST00000448183 HACL1Q9UJ83 578 aa7.89□□□□□ -1.15
NEDD9-204ENST00000448183 MTF2Q9Y483 593 aaPredicted RBP7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms