RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 MRGPRX3Q96LB0 322 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 HAPLN3Q96S86 360 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 FEM1AQ9BSK4 669 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 STK33Q9BYT3 514 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 CCDC86Q9H6F5 360 aaKnown RBP7.99□□□□□ -1.13
CD44-211ENST00000442151 PREBQ9HCU5 417 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 FSCN3Q9NQT6 498 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 FTSJ1Q9UET6 329 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 VPS28Q9UK41 221 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 PCDHGA1Q9Y5H4 931 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 SNX11Q9Y5W9 270 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 SYNJ2BP-COX16A0A087WUM0 186 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 A0A1W2PP55 124 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 TTC34A8MYJ7 566 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 C1QTNF9BB2RNN3 333 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 C3orf80F5H4A9 247 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 FOXN3O00409 490 aaPredicted RBP7.99□□□□□ -1.13
CD44-211ENST00000442151 MCF2LO15068 1137 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 MID1O15344 667 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 KRT37O76014 449 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 LDOC1O95751 146 aaPredicted RBP7.99□□□□□ -1.13
CD44-211ENST00000442151 PRNPP04156 253 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 C1QTNF9P0C862 333 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 MZF1P28698 734 aaPredicted RBP7.99□□□□□ -1.13
CD44-211ENST00000442151 CDH5P33151 784 aaPredicted RBP7.99□□□□□ -1.13
CD44-211ENST00000442151 ANP32AP39687 249 aaKnown RBP7.99□□□□□ -1.13
CD44-211ENST00000442151 GABRB2P47870 512 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 PSMD8P48556 350 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 CXCR3P49682 368 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 ILKQ13418 452 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 EIF4EBP2Q13542 120 aaPredicted RBP7.99□□□□□ -1.13
CD44-211ENST00000442151 RAPGEF1Q13905 1077 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 SLC25A52Q3SY17 297 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 C5orf22Q49AR2 442 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 FSCBQ5H9T9 825 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 SWT1Q5T5J6 900 aaKnown RBP7.99□□□□□ -1.13
CD44-211ENST00000442151 NAPEPLDQ6IQ20 393 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 FBXL22Q6P050 247 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 NCEH1Q6PIU2 408 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP7.99□□□□□ -1.13
CD44-211ENST00000442151 CCNI2Q6ZMN8 369 aaPredicted RBP7.99□□□□□ -1.13
CD44-211ENST00000442151 FAM183BPQ6ZVS7 135 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 CACUL1Q86Y37 369 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 STK40Q8N2I9 435 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 ZNF366Q8N895 744 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 TMIEQ8NEW7 156 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 P2RY11Q96G91 374 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 SERAC1Q96JX3 654 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 PRICKLE1Q96MT3 831 aaPredicted RBP7.99□□□□□ -1.13
CD44-211ENST00000442151 CPXM1Q96SM3 734 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 FAM129BQ96TA1 746 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 ELF4Q99607 663 aaPredicted RBP7.99□□□□□ -1.13
CD44-211ENST00000442151 PRMT1Q99873 361 aaKnown RBP7.99□□□□□ -1.13
CD44-211ENST00000442151 SIK2Q9H0K1 926 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 CD93Q9NPY3 652 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 PLCB1Q9NQ66 1216 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 COX16Q9P0S2 106 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 INTS6Q9UL03 887 aaKnown RBP7.99□□□□□ -1.13
CD44-211ENST00000442151 HPCAL4Q9UM19 191 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 TBC1D30Q9Y2I9 924 aa7.99□□□□□ -1.13
CD44-211ENST00000442151 CKAP5Q14008 2032 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 A0A1B0GTQ1 180 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 ANKRD62A6NC57 917 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 DRGXA6NNA5 263 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 BECN2A8MW95 431 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 PRAMEF26H0Y7S4 382 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 CBFA2T3O75081 653 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 PAGE1O75459 146 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 CLCN1P35523 988 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 HNF1BP35680 557 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 RXRGP48443 463 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 SULT1E1P49888 294 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 RNASE9P60153 205 aaKnown RBP7.98□□□□□ -1.13
CD44-211ENST00000442151 E2F1Q01094 437 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 KCNJ12Q14500 433 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 DRAP1Q14919 205 aaPredicted RBP7.98□□□□□ -1.13
CD44-211ENST00000442151 DLG2Q15700 870 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 KLHDC7AQ5VTJ3 777 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 GJB7Q6PEY0 223 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 TMPRSS7Q7RTY8 843 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 TMPRSS12Q86WS5 348 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 PASD1Q8IV76 773 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 APCDD1Q8J025 514 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 WDTC1Q8N5D0 677 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 ATP11CQ8NB49 1132 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 OR2I1PQ8NGU4 316 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 ENOX1Q8TC92 643 aaKnown RBP7.98□□□□□ -1.13
CD44-211ENST00000442151 WFDC5Q8TCV5 224 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 PTPRN2Q92932 1015 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 MYO19Q96H55 970 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 GBP4Q96PP9 640 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 NPY6RQ99463 290 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 CEP44Q9C0F1 390 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 TKTL2Q9H0I9 626 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 ARHGEF38Q9NXL2 777 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 CYTH4Q9UIA0 394 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 SLCO3A1Q9UIG8 710 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 VANGL2Q9ULK5 521 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 PCNX2A6NKB5 2137 aa7.98□□□□□ -1.13
CD44-211ENST00000442151 MAP1BP46821 2468 aaKnown RBP7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms