RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 SPC25Q9HBM1 224 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 ZCWPW2A0A1B0GU75 182 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 SMIM35A0A1B0GVV1 85 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 EEF2KO00418 725 aaKnown RBP16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 DCXO43602 365 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 H2AFYO75367 372 aaKnown RBP16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 HSPA4LO95757 839 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 ZCCHC18P0CG32 403 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 PIM1P11309 404 aaPredicted RBP16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 TBL3Q12788 808 aaKnown RBP16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 USP4Q13107 963 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 MSLNQ13421 630 aaPredicted RBP16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 CUL3Q13618 768 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 SFT2D3Q587I9 215 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 FSTL4Q6MZW2 842 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 NOTUMQ6P988 496 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 PID1Q7Z2X4 250 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 TNS4Q8IZW8 715 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 DNAJB3Q8WWF6 145 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 CCDC124Q96CT7 223 aaKnown RBP16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 SLC2A13Q96QE2 648 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 RTKNQ9BST9 563 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 KLHL4Q9C0H6 718 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 DNAI2Q9GZS0 605 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 UPF3AQ9H1J1 476 aaKnown RBP16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 CASS4Q9NQ75 786 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 RNF19AQ9NV58 838 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 KLHL8Q9P2G9 620 aaPredicted RBP16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 VANGL2Q9ULK5 521 aa16.73■□□□□ 0.27
CLCNKA-203ENST00000439316 A0A096LPK6 155 aa16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 C17orf102A2RUQ5 167 aa16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 KPNA6O60684 536 aa16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 GPR32O75388 356 aa16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 MYCNP04198 464 aaPredicted RBP16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 PNPLA4P41247 253 aa16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 MTTPP55157 894 aa16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 KLF10Q13118 480 aa16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 SLC9B1Q4ZJI4 515 aa16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 METTL21CQ5VZV1 264 aa16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 HPS6Q86YV9 775 aa16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 APPL2Q8NEU8 664 aa16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 SLC7A14Q8TBB6 771 aa16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 HNRNPABQ99729 332 aaKnown RBP16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 MTG1Q9BT17 334 aaPredicted RBP16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 DUSP16Q9BY84 665 aa16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 CDHR5Q9HBB8 845 aa16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 STAP1Q9ULZ2 295 aa16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 ARHGAP26Q9UNA1 814 aa16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 RAD54BQ9Y620 910 aa16.72■□□□□ 0.27
CLCNKA-203ENST00000439316 M0QYT0 321 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 KCNK1O00180 336 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 CASQ2O14958 399 aaPredicted RBP16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 ADAMTS4O75173 837 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 GLDCP23378 1020 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 ACAT1P24752 427 aaKnown RBP16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 PEX2P28328 305 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 RPL26P61254 145 aaKnown RBP16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 IRF9Q00978 393 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 PEX6Q13608 980 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 ANKRD20A4Q4UJ75 823 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 CFAP157Q5JU67 520 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 LPCAT4Q643R3 524 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 KCTD11Q693B1 232 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 OSTM1Q86WC4 334 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 RAET1EQ8TD07 263 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 MAPK15Q8TD08 544 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 GDPD5Q8WTR4 605 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 WNT8BQ93098 351 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 AZIN2Q96A70 460 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 ATXN7L3BQ96GX2 97 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 TNIP3Q96KP6 325 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 AGAP2Q99490 1192 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 MCMBPQ9BTE3 642 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 PIGVQ9NUD9 493 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 BFARQ9NZS9 450 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 TBC1D30Q9Y2I9 924 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 SYNJ2BP-COX16A0A087WUM0 186 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 LOC100653049A0A140TA62 436 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 SMIM28A0A1B0GU29 152 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 E9PBE3 544 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 H3BNX3 289 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 KLHL41O60662 606 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 TRIM13O60858 407 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 USP12O75317 370 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 KRT34O76011 436 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 UQCRBP14927 111 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 TAF6P49848 677 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 CSE1LP55060 971 aaKnown RBP16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 KBTBD6Q86V97 674 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 B3GALNT2Q8NCR0 500 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 KCTD13Q8WZ19 329 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 KCNK16Q96T55 309 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 OSMRQ99650 979 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 COX16Q9P0S2 106 aa16.71■□□□□ 0.27
CLCNKA-203ENST00000439316 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 ERI2A8K979 691 aaKnown RBP16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 CLGNO14967 610 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 TIMM44O43615 452 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 ZMPSTE24O75844 475 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms