RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 EIF2B3Q9NR50 452 aaKnown RBP6.8□□□□□ -1.32
VPS41-204ENST00000413141 TDP1Q9NUW8 608 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 LMCD1Q9NZU5 365 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 KLHL8Q9P2G9 620 aaPredicted RBP6.8□□□□□ -1.32
VPS41-204ENST00000413141 IGSF9Q9P2J2 1179 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 IPO11Q9UI26 975 aaKnown RBP6.8□□□□□ -1.32
VPS41-204ENST00000413141 KIF26AQ9ULI4 1882 aaPredicted RBP6.8□□□□□ -1.32
VPS41-204ENST00000413141 HPCAL4Q9UM19 191 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 TBC1D30Q9Y2I9 924 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 CHD5Q8TDI0 1954 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 COL4A3Q01955 1670 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 MYO7AQ13402 2215 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.79□□□□□ -1.32
VPS41-204ENST00000413141 A0A0D9SEW6 157 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 ILVBLA1L0T0 632 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 F5H423 210 aaPredicted RBP6.79□□□□□ -1.32
VPS41-204ENST00000413141 GOLGA8MH3BSY2 632 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 J3KR12 359 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 MAP2K7O14733 419 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 ZBTB24O43167 697 aaPredicted RBP6.79□□□□□ -1.32
VPS41-204ENST00000413141 MAP3K13O43283 966 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 ATP8B1O43520 1251 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 PRAMEF11O60813 436 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 TBX10O75333 385 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 HLA-DQB2P05538 268 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 CCNB1P14635 433 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 NFKB1P19838 968 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 FSHRP23945 695 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 CD68P34810 354 aaPredicted RBP6.79□□□□□ -1.32
VPS41-204ENST00000413141 ACVRL1P37023 503 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 HSD17B3P37058 310 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 TNK2Q07912 1038 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 IL10RBQ08334 325 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 ZNF177Q13360 481 aaPredicted RBP6.79□□□□□ -1.32
VPS41-204ENST00000413141 CDH18Q13634 790 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 CBX2Q14781 532 aaPredicted RBP6.79□□□□□ -1.32
VPS41-204ENST00000413141 SLMAPQ14BN4 828 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 UAP1Q16222 522 aaPredicted RBP6.79□□□□□ -1.32
VPS41-204ENST00000413141 HIF1AQ16665 826 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 PARP6Q2NL67 630 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 ANO4Q32M45 955 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 TEX44Q53QW1 395 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 SPDYCQ5MJ68 293 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 MPP7Q5T2T1 576 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 SYCP2LQ5T4T6 812 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 ITPRIPL1Q6GPH6 555 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 ZNF783Q6ZMS7 281 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 CEP128Q6ZU80 1094 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 ZNF534Q76KX8 674 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 GET4Q7L5D6 327 aaPredicted RBP6.79□□□□□ -1.32
VPS41-204ENST00000413141 CCDC25Q86WR0 208 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 ZNF354CQ86Y25 554 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 RELL1Q8IUW5 271 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 ARID3BQ8IVW6 561 aaPredicted RBP6.79□□□□□ -1.32
VPS41-204ENST00000413141 MFN1Q8IWA4 741 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 CARNMT1Q8N4J0 409 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 CNTD1Q8N815 330 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 TDRD5Q8NAT2 981 aaKnown RBP6.79□□□□□ -1.32
VPS41-204ENST00000413141 OR7D4Q8NG98 312 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 WFDC5Q8TCV5 224 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 USP33Q8TEY7 942 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 EXOC4Q96A65 974 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 PABPC5Q96DU9 382 aaKnown RBP6.79□□□□□ -1.32
VPS41-204ENST00000413141 TEKT5Q96M29 485 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 PWWP2AQ96N64 755 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 AGAP3Q96P47 875 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 IL12RB2Q99665 862 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 APOL5Q9BWW9 433 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 TSPYL1Q9H0U9 437 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 TTYH1Q9H313 450 aaPredicted RBP6.79□□□□□ -1.32
VPS41-204ENST00000413141 EPB41L4BQ9H329 900 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 CDC42EP4Q9H3Q1 356 aaKnown RBP6.79□□□□□ -1.32
VPS41-204ENST00000413141 VIPAS39Q9H9C1 493 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 DNAJC17Q9NVM6 304 aaKnown RBP6.79□□□□□ -1.32
VPS41-204ENST00000413141 CLEC1BQ9P126 229 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 RSPH14Q9UHP6 348 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 CDH22Q9UJ99 828 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 TRHDEQ9UKU6 1024 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 ATP8A1Q9Y2Q0 1164 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 DOCK6Q96HP0 2047 aa6.79□□□□□ -1.32
VPS41-204ENST00000413141 SHROOM3Q8TF72 1996 aa6.78□□□□□ -1.32
VPS41-204ENST00000413141 E7ESA3 106 aa6.78□□□□□ -1.32
VPS41-204ENST00000413141 E7EVH7 732 aa6.78□□□□□ -1.32
VPS41-204ENST00000413141 H0Y626 953 aa6.78□□□□□ -1.32
VPS41-204ENST00000413141 EIF3HO15372 352 aaKnown RBP eCLIP6.78□□□□□ -1.32
VPS41-204ENST00000413141 CACNG3O60359 315 aa6.78□□□□□ -1.32
VPS41-204ENST00000413141 PENKP01210 267 aaPredicted RBP6.78□□□□□ -1.32
VPS41-204ENST00000413141 JCHAINP01591 159 aa6.78□□□□□ -1.32
VPS41-204ENST00000413141 CYBBP04839 570 aa6.78□□□□□ -1.32
VPS41-204ENST00000413141 APRTP07741 180 aa6.78□□□□□ -1.32
VPS41-204ENST00000413141 HOXB8P17481 243 aaPredicted RBP6.78□□□□□ -1.32
VPS41-204ENST00000413141 GLDCP23378 1020 aa6.78□□□□□ -1.32
VPS41-204ENST00000413141 FCARP24071 287 aa6.78□□□□□ -1.32
VPS41-204ENST00000413141 ETFBP38117 255 aa6.78□□□□□ -1.32
VPS41-204ENST00000413141 CSKP41240 450 aa6.78□□□□□ -1.32
VPS41-204ENST00000413141 IFNAR2P48551 515 aa6.78□□□□□ -1.32
VPS41-204ENST00000413141 RENBPP51606 427 aa6.78□□□□□ -1.32
VPS41-204ENST00000413141 PMS2P54278 862 aa6.78□□□□□ -1.32
VPS41-204ENST00000413141 OXCT1P55809 520 aa6.78□□□□□ -1.32
VPS41-204ENST00000413141 ARL4CP56559 192 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms