RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 CARM1Q86X55 608 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 DCLK2Q8N568 766 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 ZNF781Q8N8C0 355 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 TDRD5Q8NAT2 981 aaKnown RBP5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 URGCPQ8TCY9 931 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 EMID1Q96A84 441 aaPredicted RBP5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 PGAP3Q96FM1 320 aaPredicted RBP5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 CNDP2Q96KP4 475 aaKnown RBP5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 LENG8Q96PV6 779 aaPredicted RBP5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 QTRT2Q9H974 415 aaKnown RBP5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 NMRAL1Q9HBL8 299 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 NGRNQ9NPE2 291 aaKnown RBP5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 GDAP2Q9NXN4 497 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 UBAP1Q9NZ09 502 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 TXNDC16Q9P2K2 825 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 AP4B1Q9Y6B7 739 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 PTPRDP23468 1912 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 MYO18AQ92614 2054 aaKnown RBP5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 TCRBV3S1A0A5B6 114 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 RNF103O00237 685 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 TRIM38O00635 465 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 SOCS7O14512 581 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 DCLK1O15075 740 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 GRID2O43424 1007 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 DCXO43602 365 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 BMP10O95393 424 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 HSPA4LO95757 839 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 SLC25A27O95847 323 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 KRT19P08727 400 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 SRGAP2CP0DJJ0 459 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 ZNF26P17031 533 aaPredicted RBP5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 MGAT1P26572 445 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 PMLP29590 882 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 SERPINB6P35237 376 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 MRPL19P49406 292 aaKnown RBP5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 ACADVLP49748 655 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 CDK9P50750 372 aaKnown RBP5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 EPHB1P54762 984 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 INHBCP55103 352 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 DGKZQ13574 1117 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 FLOT2Q14254 428 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 ANO4Q32M45 955 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 NADK2Q4G0N4 442 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 KCTD21Q4G0X4 260 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 SLC9B1Q4ZJI4 515 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 RAB6CQ53S08 254 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 PPP1R26Q5T8A7 1209 aaPredicted RBP5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 MEX3CQ5U5Q3 659 aaKnown RBP5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 FSTL4Q6MZW2 842 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 FAM45BPQ6NSW5 357 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 SLC25A41Q8N5S1 370 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 METTL25Q8N6Q8 603 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 POU5F2Q8N7G0 328 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 UBA3Q8TBC4 463 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 FAM45AQ8TCE6 357 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 HDAC11Q96DB2 347 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 KLRG1Q96E93 195 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 P2RY11Q96G91 374 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 NPY6RQ99463 290 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 KIFC1Q9BW19 673 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 GATA5Q9BWX5 397 aaPredicted RBP5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 RAB6CQ9H0N0 254 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 RHOJQ9H4E5 214 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 TRPC7Q9HCX4 862 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 VPS45Q9NRW7 570 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 SYBUQ9NX95 663 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 EPS15L1Q9UBC2 864 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 CDH7Q9ULB5 785 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 PSAT1Q9Y617 370 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 CEPT1Q9Y6K0 416 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 AK5Q9Y6K8 562 aa5.85□□□□□ -1.47
CCDC88A-203ENST00000412148 SHROOM3Q8TF72 1996 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 GREB1Q4ZG55 1949 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 A0A096LPK6 155 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 CAPN8A6NHC0 703 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 PIK3R2O00459 728 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 XPO1O14980 1071 aaKnown RBP5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 TRIM24O15164 1050 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 ADCY6O43306 1168 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 CLASP2O75122 1294 aaKnown RBP5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 PDE5AO76074 875 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 RECKO95980 971 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 IQCF3P0C7M6 154 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 CDH2P19022 906 aaPredicted RBP5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 TTKP33981 857 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 GRIA1P42261 906 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 KPNA2P52292 529 aaKnown RBP5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 HMGCS2P54868 508 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 CDC42EP1Q00587 391 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 RHDQ02161 417 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 PRKG1Q13976 671 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 PTK2BQ14289 1009 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 UGP2Q16851 508 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 NAPRTQ6XQN6 538 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 RFX8Q6ZV50 586 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 MFSD2AQ8NA29 543 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 MAPK15Q8TD08 544 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 CCDC126Q96EE4 140 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms