RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 A0A087X0T9 212 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 OPLAHO14841 1288 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 GPIP06744 558 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 PON1P27169 355 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 CD151P48509 253 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 TRIM32Q13049 653 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 VEPH1Q14D04 833 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 MOXD1Q6UVY6 613 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 P2RY8Q86VZ1 359 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 ZFYVE28Q9HCC9 887 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 TDRKHQ9Y2W6 561 aaKnown RBP13.08□□□□□ -0.32
COL6A3-206ENST00000409809 FAM47E-STBD1D6RA91 191 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 NPY2RP49146 381 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 TMEM44Q2T9K0 475 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 WDR72Q3MJ13 1102 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 TTMPQ5BVD1 217 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 ULK3Q6PHR2 472 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 CCDC107Q8WV48 283 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 SEMA4AQ9H3S1 761 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 CHD2O14647 1828 aaKnown RBP13.07□□□□□ -0.32
COL6A3-206ENST00000409809 PLOD2O00469 737 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 CYBBP04839 570 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 CNPY1Q3B7I2 92 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 TUBA1CQ9BQE3 449 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 PROSCO94903 275 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 ZBTB11O95625 1053 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-206ENST00000409809 TMPRSS11AQ6ZMR5 421 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 THAP5Q7Z6K1 395 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 MKL1Q969V6 931 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 KCTD15Q96SI1 283 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-206ENST00000409809 KLF6Q99612 283 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-206ENST00000409809 HTATIP2Q9BUP3 242 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 IGSF1Q8N6C5 1336 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 H6PDO95479 791 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 PAEPP09466 180 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 HERVK_113P62684 666 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 USP18Q9UMW8 372 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 KPNA1P52294 538 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-206ENST00000409809 SUZ12Q15022 739 aaKnown RBP13.07□□□□□ -0.32
COL6A3-206ENST00000409809 QRFPRQ96P65 431 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 ZNF446Q9NWS9 450 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 LSM7Q9UK45 103 aaKnown RBP13.07□□□□□ -0.32
COL6A3-206ENST00000409809 KCNJ1P48048 391 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 IL18R1Q13478 541 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 RHEBQ15382 184 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 ALLCQ8N6M5 410 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 FRMPD4Q14CM0 1322 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 ALDH1A2O94788 518 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 PRKG1Q13976 671 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 CHSY1Q86X52 802 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 BPIFB6Q8NFQ5 453 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 PHF10Q8WUB8 498 aaKnown RBP13.07□□□□□ -0.32
COL6A3-206ENST00000409809 RPRD1AQ96P16 312 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-206ENST00000409809 PCDHA3Q9Y5H8 950 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 GLP2RO95838 553 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 FOSL1P15407 271 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 RFTN2Q52LD8 501 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-206ENST00000409809 IPMKQ8NFU5 416 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 SPPL2AQ8TCT8 520 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 KCTD4Q8WVF5 259 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 MRPL57Q9BQC6 102 aaKnown RBP13.07□□□□□ -0.32
COL6A3-206ENST00000409809 GPR63Q9BZJ6 419 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 IL22Q9GZX6 179 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 VPS51Q9UID3 782 aa13.07□□□□□ -0.32
COL6A3-206ENST00000409809 YWHAQP27348 245 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 ZNF268Q14587 947 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-206ENST00000409809 HTRA1Q92743 480 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 PHB2Q99623 299 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 CBX5P45973 191 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 CUL2Q13617 745 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 VMACQ2NL98 169 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 VWA5B1Q5TIE3 1220 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 AGAP3Q96P47 875 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 CNTRLQ7Z7A1 2325 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 AFDNP55196 1824 aaKnown RBP13.06□□□□□ -0.32
COL6A3-206ENST00000409809 ISPDA4D126 451 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 MYCP01106 439 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-206ENST00000409809 CHRM3P20309 590 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 RPA1P27694 616 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 SUPT20HL1Q3ZLR7 823 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 DPP9Q86TI2 863 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 CDYL2Q8N8U2 506 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 TNFAIP8L1Q8WVP5 186 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 THAP2Q9H0W7 228 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 CCDC88CQ9P219 2028 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 SMIM22K7EJ46 135 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 CYP11B1P15538 503 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 SV2CQ496J9 727 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 FBXO39Q8N4B4 442 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 CD101Q93033 1021 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 TCEAL3Q969E4 200 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 APOL5Q9BWW9 433 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 CENPBD1B2RD01 187 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 PRG2P13727 222 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 FBLN1P23142 703 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 GPC1P35052 558 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 BAG6P46379 1132 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 YAP1P46937 504 aaKnown RBP13.06□□□□□ -0.32
COL6A3-206ENST00000409809 ZMYND11Q15326 602 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 ANO7Q6IWH7 933 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms