RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 TSEN34Q9BSV6 310 aaKnown RBP18.47■□□□□ 0.55
COL18A1-204ENST00000400337 NXF3Q9H4D5 531 aaKnown RBP18.47■□□□□ 0.55
COL18A1-204ENST00000400337 GPSM1Q86YR5 675 aa18.47■□□□□ 0.55
COL18A1-204ENST00000400337 SLC41A1Q8IVJ1 513 aa18.47■□□□□ 0.55
COL18A1-204ENST00000400337 CDRT15Q96T59 188 aa18.47■□□□□ 0.55
COL18A1-204ENST00000400337 PCDHB18PQ96TA0 734 aa18.47■□□□□ 0.55
COL18A1-204ENST00000400337 MRPL45Q9BRJ2 306 aaKnown RBP18.47■□□□□ 0.55
COL18A1-204ENST00000400337 FBXO6Q9NRD1 293 aaPredicted RBP18.47■□□□□ 0.55
COL18A1-204ENST00000400337 TMEM51Q9NW97 253 aa18.47■□□□□ 0.55
COL18A1-204ENST00000400337 AP4S1Q9Y587 144 aa18.47■□□□□ 0.55
COL18A1-204ENST00000400337 SF3B1O75533 1304 aaKnown RBP eCLIP18.47■□□□□ 0.551e-6■■■■■ 84.4
COL18A1-204ENST00000400337 HOXB8P17481 243 aaPredicted RBP18.46■□□□□ 0.55
COL18A1-204ENST00000400337 SERPINA4P29622 427 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 RPL14P50914 215 aaKnown RBP18.46■□□□□ 0.55
COL18A1-204ENST00000400337 DRG2P55039 364 aaKnown RBP18.46■□□□□ 0.55
COL18A1-204ENST00000400337 AMPD2Q01433 879 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 SGCGQ13326 291 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 CRYMQ14894 314 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 NECAB2Q7Z6G3 386 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 SEMA4BQ9NPR2 832 aaPredicted RBP18.46■□□□□ 0.55
COL18A1-204ENST00000400337 KRT84Q9NSB2 600 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 DNMT3LQ9UJW3 386 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 GSTM1P09488 218 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 NAGLUP54802 743 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 IL2P60568 153 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 CCDC142Q17RM4 750 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 SDHAF4Q5VUM1 108 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 ERLEC1Q96DZ1 483 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 CYP2A6P11509 494 aaPredicted RBP18.46■□□□□ 0.55
COL18A1-204ENST00000400337 CYP2R1Q6VVX0 501 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 LRRC52Q8N7C0 313 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 WDR48Q8TAF3 677 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 C2orf49Q9BVC5 232 aaPredicted RBP18.46■□□□□ 0.55
COL18A1-204ENST00000400337 BBS2Q9BXC9 721 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 KCNK4Q9NYG8 393 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.46■□□□□ 0.553e-7■■■□□ 16
COL18A1-204ENST00000400337 PROCP04070 461 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 ERCC2P18074 760 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 TYMPP19971 482 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 LLGL2Q6P1M3 1020 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 CYP4Z1Q86W10 505 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 MREGQ8N565 214 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 PAWRQ96IZ0 340 aaKnown RBP18.46■□□□□ 0.55
COL18A1-204ENST00000400337 ZYG11BQ9C0D3 744 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 SLC27A5Q9Y2P5 690 aa18.46■□□□□ 0.55
COL18A1-204ENST00000400337 ADGRA3Q8IWK6 1321 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 POLR2LP62875 67 aaKnown RBP18.45■□□□□ 0.54
COL18A1-204ENST00000400337 PFKFB4Q16877 469 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 FAM98BQ52LJ0 330 aaKnown RBP18.45■□□□□ 0.54
COL18A1-204ENST00000400337 SNX30Q5VWJ9 437 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 KRT78Q8N1N4 520 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 JOSD2Q8TAC2 188 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 GPR20Q99678 358 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 TMEM79Q9BSE2 394 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 ZDHHC6Q9H6R6 413 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 MRPL17Q9NRX2 175 aaKnown RBP18.45■□□□□ 0.54
COL18A1-204ENST00000400337 AHSPQ9NZD4 102 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 MPP6Q9NZW5 540 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 BTBD7Q9P203 1132 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 BCL9LQ86UU0 1499 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 SH3BGRLO75368 114 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 PARNO95453 639 aaKnown RBP18.45■□□□□ 0.54
COL18A1-204ENST00000400337 MATKP42679 507 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 RAD23AP54725 363 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 MRPS5P82675 430 aaKnown RBP18.45■□□□□ 0.54
COL18A1-204ENST00000400337 SLC34A1Q06495 639 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 MSLNQ13421 630 aaPredicted RBP18.45■□□□□ 0.54
COL18A1-204ENST00000400337 OTUD3Q5T2D3 398 aaPredicted RBP18.45■□□□□ 0.54
COL18A1-204ENST00000400337 PRMT9Q6P2P2 845 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 CCDC166P0CW27 439 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 ME2P23368 584 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 CCL23P55773 120 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 DEFA1P59665 94 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 DEFA3P59666 94 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 NETO2Q8NC67 525 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 SMAD5Q99717 465 aaKnown RBP18.45■□□□□ 0.54
COL18A1-204ENST00000400337 TMEM245Q9H330 911 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 RNPEPQ9H4A4 650 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 RERGLQ9H628 205 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 OPTCQ9UBM4 332 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 MSCO60682 206 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 GSNP06396 782 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 RPL9P32969 192 aaKnown RBP18.45■□□□□ 0.54
COL18A1-204ENST00000400337 NUP107P57740 925 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 CRY1Q16526 586 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 IL27RAQ6UWB1 636 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 MTSS1LQ765P7 747 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 PRCCQ92733 491 aaPredicted RBP18.45■□□□□ 0.54
COL18A1-204ENST00000400337 HIC2Q96JB3 615 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 SAR1AQ9NR31 198 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 ARL15Q9NXU5 204 aa18.45■□□□□ 0.54
COL18A1-204ENST00000400337 FAM237BA0A1B0GVD1 139 aa18.44■□□□□ 0.54
COL18A1-204ENST00000400337 CLPTM1O96005 669 aa18.44■□□□□ 0.54
COL18A1-204ENST00000400337 LTA4HP09960 611 aaKnown RBP18.44■□□□□ 0.54
COL18A1-204ENST00000400337 POLR2EP19388 210 aaKnown RBP18.44■□□□□ 0.54
COL18A1-204ENST00000400337 TGM3Q08188 693 aa18.44■□□□□ 0.54
COL18A1-204ENST00000400337 DOK6Q6PKX4 331 aa18.44■□□□□ 0.54
COL18A1-204ENST00000400337 DENND1CQ8IV53 801 aa18.44■□□□□ 0.54
COL18A1-204ENST00000400337 STK40Q8N2I9 435 aa18.44■□□□□ 0.54
COL18A1-204ENST00000400337 PPTC7Q8NI37 304 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms