RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 TAS2R1Q9NYW7 299 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 CD274Q9NZQ7 290 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 KPNA6O60684 536 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 GRIA4P48058 902 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 CTBP1Q13363 440 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 KHDC1Q4VXA5 237 aaKnown RBP18.86■□□□□ 0.61
USP48-204ENST00000400301 TMEM259Q4ZIN3 620 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 RINLQ6ZS11 566 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 SERPINB11Q96P15 392 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 ADAM2Q99965 735 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 NMRK1Q9NWW6 199 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 HEATR9A2RTY3 570 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 ZBTB24O43167 697 aaPredicted RBP18.86■□□□□ 0.61
USP48-204ENST00000400301 HARS2P49590 506 aaKnown RBP18.86■□□□□ 0.61
USP48-204ENST00000400301 FAM187BQ17R55 369 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 C6orf10Q5SRN2 563 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 OMDQ99983 421 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 COLEC11Q9BWP8 271 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 ANPEPP15144 967 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 MAP2K5Q13163 448 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 ZRANB3Q5FWF4 1079 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 OLFML1Q6UWY5 402 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 APLFQ8IW19 511 aaPredicted RBP18.86■□□□□ 0.61
USP48-204ENST00000400301 GSTCDQ8NEC7 633 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 FAM105AQ9NUU6 356 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 FARP1Q9Y4F1 1045 aaPredicted RBP18.86■□□□□ 0.61
USP48-204ENST00000400301 ORC6Q9Y5N6 252 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 PLIN3O60664 434 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 IRF1P10914 325 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 COX4I1P13073 169 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 TMEM174Q8WUU8 243 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 MFSD3Q96ES6 412 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 ABCC13Q9NSE7 274 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 COPG2Q9UBF2 871 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 PTCH2Q9Y6C5 1203 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 IGKV6D-21A0A0A0MT36 114 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 TYROBPO43914 113 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 E2F6O75461 281 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 EPHA3P29320 983 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 RAB27AP51159 221 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 MRPS6P82932 125 aaKnown RBP18.85■□□□□ 0.61
USP48-204ENST00000400301 BTKQ06187 659 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 VEPH1Q14D04 833 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 TEX44Q53QW1 395 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 SH3TC2Q8TF17 1288 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 ASIC4Q96FT7 647 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 SH3GL3Q99963 347 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 CINPQ9BW66 212 aaPredicted RBP18.85■□□□□ 0.61
USP48-204ENST00000400301 SNX13Q9Y5W8 968 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 F5H5T6 163 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 DPYSL4O14531 572 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 HDAC3O15379 428 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 STX7O15400 261 aaKnown RBP18.85■□□□□ 0.61
USP48-204ENST00000400301 HCRTO43612 131 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 RAMP2O60895 175 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 GLP2RO95838 553 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 HMOX2P30519 316 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 RABGGTBP53611 331 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 SLC39A12Q504Y0 691 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 UNC5BQ8IZJ1 945 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 SPATA6LQ8N4H0 392 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 LENG1Q96BZ8 264 aaPredicted RBP18.85■□□□□ 0.61
USP48-204ENST00000400301 MAML3Q96JK9 1138 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 HNRNPABQ99729 332 aaKnown RBP18.85■□□□□ 0.61
USP48-204ENST00000400301 POMKQ9H5K3 350 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 STN1Q9H668 368 aaKnown RBP18.85■□□□□ 0.61
USP48-204ENST00000400301 CHRAC1Q9NRG0 131 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 GID8Q9NWU2 228 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 AFF4Q9UHB7 1163 aaKnown RBP18.85■□□□□ 0.61
USP48-204ENST00000400301 ADAMTS5Q9UNA0 930 aa18.85■□□□□ 0.61
USP48-204ENST00000400301 PGK1P00558 417 aa18.84■□□□□ 0.61
USP48-204ENST00000400301 MARK4Q96L34 752 aa18.84■□□□□ 0.61
USP48-204ENST00000400301 SLC17A6Q9P2U8 582 aa18.84■□□□□ 0.61
USP48-204ENST00000400301 ME2P23368 584 aa18.84■□□□□ 0.61
USP48-204ENST00000400301 CYP2C18P33260 490 aa18.84■□□□□ 0.61
USP48-204ENST00000400301 BRCC3P46736 316 aa18.84■□□□□ 0.61
USP48-204ENST00000400301 SEMA5AQ13591 1074 aa18.84■□□□□ 0.61
USP48-204ENST00000400301 LRRC23Q53EV4 343 aaPredicted RBP18.84■□□□□ 0.61
USP48-204ENST00000400301 RFWD3Q6PCD5 774 aa18.84■□□□□ 0.61
USP48-204ENST00000400301 PLA2G4CQ9UP65 541 aa18.84■□□□□ 0.61
USP48-204ENST00000400301 EDN1P05305 212 aa18.84■□□□□ 0.61
USP48-204ENST00000400301 EDNRBP24530 442 aa18.84■□□□□ 0.61
USP48-204ENST00000400301 IYDQ6PHW0 289 aa18.84■□□□□ 0.61
USP48-204ENST00000400301 LRRC43Q8N309 656 aa18.84■□□□□ 0.61
USP48-204ENST00000400301 SLC35F5Q8WV83 523 aa18.84■□□□□ 0.61
USP48-204ENST00000400301 MRPL46Q9H2W6 279 aaKnown RBP18.84■□□□□ 0.61
USP48-204ENST00000400301 XPR1Q9UBH6 696 aa18.84■□□□□ 0.61
USP48-204ENST00000400301 NCF1BA6NI72 391 aaPredicted RBP18.83■□□□□ 0.61
USP48-204ENST00000400301 NCF1CA8MVU1 366 aaPredicted RBP18.83■□□□□ 0.61
USP48-204ENST00000400301 NCF1P14598 390 aaPredicted RBP18.83■□□□□ 0.61
USP48-204ENST00000400301 MRPS22P82650 360 aaKnown RBP18.83■□□□□ 0.61
USP48-204ENST00000400301 INCA1Q0VD86 236 aa18.83■□□□□ 0.61
USP48-204ENST00000400301 CNDP1Q96KN2 507 aa18.83■□□□□ 0.61
USP48-204ENST00000400301 ACSS2Q9NR19 701 aa18.83■□□□□ 0.61
USP48-204ENST00000400301 CCDC167Q9P0B6 97 aa18.83■□□□□ 0.61
USP48-204ENST00000400301 RNF112Q9ULX5 631 aa18.83■□□□□ 0.61
USP48-204ENST00000400301 UPP2O95045 317 aa18.83■□□□□ 0.61
USP48-204ENST00000400301 KCNK10P57789 538 aa18.83■□□□□ 0.61
USP48-204ENST00000400301 PRKD1Q15139 912 aaPredicted RBP18.83■□□□□ 0.61
USP48-204ENST00000400301 VWA5B1Q5TIE3 1220 aa18.83■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms