RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 TRIM24O15164 1050 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 SH3BP5O60239 455 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 PPP1R11O60927 126 aaPredicted RBP9.46□□□□□ -0.89
COL28A1-201ENST00000399429 TPH1P17752 444 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 GTF2A2P52657 109 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 SLC18A2Q05940 514 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 MERTKQ12866 999 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 CSHL1Q14406 222 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 NFIXQ14938 502 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 IGDCC3Q8IVU1 814 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 SULF1Q8IWU6 871 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 RAVER1Q8IY67 606 aaKnown RBP9.46□□□□□ -0.89
COL28A1-201ENST00000399429 MCFD2Q8NI22 146 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 CANT1Q8WVQ1 401 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 NSMCE2Q96MF7 247 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 PPP1R10Q96QC0 940 aaKnown RBP9.46□□□□□ -0.89
COL28A1-201ENST00000399429 FSD1LQ9BXM9 530 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 IRF2BPLQ9H1B7 796 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 SNX15Q9NRS6 342 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 UBP1Q9NZI7 540 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 RAP2CQ9Y3L5 183 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 KANSL1LA0AUZ9 987 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 TMEM191CA6NGB0 347 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 MEIS2O14770 477 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 CLPXO76031 633 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 SLURP2P0DP57 97 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 TFEBP19484 476 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 VARSP26640 1264 aaKnown RBP9.46□□□□□ -0.9
COL28A1-201ENST00000399429 MYL6P60660 151 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 SNRPFP62306 86 aaKnown RBP9.46□□□□□ -0.9
COL28A1-201ENST00000399429 TRIM32Q13049 653 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 SNAPC2Q13487 334 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 DLGAP5Q15398 846 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 Q6ZNX1 250 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 KBTBD6Q86V97 674 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 RELL1Q8IUW5 271 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 NAT8LQ8N9F0 302 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 RDM1Q8NG50 284 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 OR6B3Q8NGW1 331 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 RAB2BQ8WUD1 216 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 OSCP1Q8WVF1 389 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 SEPT8Q92599 483 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 NAT9Q9BTE0 207 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 THUMPD3Q9BV44 507 aaKnown RBP9.46□□□□□ -0.9
COL28A1-201ENST00000399429 STK32BQ9NY57 414 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 FETUBQ9UGM5 382 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 NDUFAF1Q9Y375 327 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 RAD54BQ9Y620 910 aa9.46□□□□□ -0.9
COL28A1-201ENST00000399429 KRBA1A5PL33 1030 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 H3BNH8 94 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 AURKAO14965 403 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 PABPC1P11940 636 aaKnown RBP9.45□□□□□ -0.9
COL28A1-201ENST00000399429 PTPN1P18031 435 aaKnown RBP9.45□□□□□ -0.9
COL28A1-201ENST00000399429 TSPAN8P19075 237 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 NAMPTP43490 491 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 GRIK5Q16478 980 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 ARL13AQ5H913 290 aaPredicted RBP9.45□□□□□ -0.9
COL28A1-201ENST00000399429 TMTC4Q5T4D3 741 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 LDHDQ86WU2 507 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 ST13P5Q8NFI4 369 aaPredicted RBP9.45□□□□□ -0.9
COL28A1-201ENST00000399429 FAM162AQ96A26 154 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 ITPKCQ96DU7 683 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 GLT1D1Q96MS3 346 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 HSD17B14Q9BPX1 270 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 MED10Q9BTT4 135 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 LRRC40Q9H9A6 602 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 GDAP2Q9NXN4 497 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 IPO11Q9UI26 975 aaKnown RBP9.45□□□□□ -0.9
COL28A1-201ENST00000399429 ANAPC2Q9UJX6 822 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 PCDHA10Q9Y5I2 948 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 GAKO14976 1311 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 CLTCQ00610 1675 aaKnown RBP9.45□□□□□ -0.9
COL28A1-201ENST00000399429 CLRN2A0PK11 232 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 ZSCAN5BA6NJL1 495 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 FAM25AB3EWG3 89 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 FAM25CB3EWG5 89 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 FAM25GB3EWG6 89 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 EI24O14681 340 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 LCP1P13796 627 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 PAMP19021 973 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 ECT2LQ008S8 904 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 RUNX1T1Q06455 604 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 GRAPQ13588 217 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 RAB39AQ14964 217 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 C15orf59Q2T9L4 293 aaPredicted RBP9.45□□□□□ -0.9
COL28A1-201ENST00000399429 KCNT2Q6UVM3 1135 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 NETO2Q8NC67 525 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 GRAPLQ8TC17 118 aaPredicted RBP9.45□□□□□ -0.9
COL28A1-201ENST00000399429 ACMSDQ8TDX5 336 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 AZIN2Q96A70 460 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 FBXL20Q96IG2 436 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 RIT2Q99578 217 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 GPR88Q9GZN0 384 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 RUBCNLQ9H714 662 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 DBNDD1Q9H9R9 158 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 PRDM16Q9HAZ2 1276 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 MOV10Q9HCE1 1003 aaKnown RBP9.45□□□□□ -0.9
COL28A1-201ENST00000399429 TRMT13Q9NUP7 481 aaKnown RBP9.45□□□□□ -0.9
COL28A1-201ENST00000399429 HSFX1Q9UBD0 423 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 TSR3Q9UJK0 312 aaKnown RBP9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms