RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 BCO2Q9BYV7 579 aa16.43■□□□□ 0.22
PCDH1-203ENST00000394536 OR12D3Q9UGF7 316 aa16.43■□□□□ 0.22
PCDH1-203ENST00000394536 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.43■□□□□ 0.22
PCDH1-203ENST00000394536 ANGPT2O15123 496 aa16.43■□□□□ 0.22
PCDH1-203ENST00000394536 NOS2P35228 1153 aa16.43■□□□□ 0.22
PCDH1-203ENST00000394536 PLD6Q8N2A8 252 aaKnown RBP16.43■□□□□ 0.22
PCDH1-203ENST00000394536 QKIQ96PU8 341 aaKnown RBP eCLIP16.43■□□□□ 0.22
PCDH1-203ENST00000394536 RBM22Q9NW64 420 aaKnown RBP eCLIP16.43■□□□□ 0.22
PCDH1-203ENST00000394536 GOLGA4Q13439 2230 aaKnown RBP16.43■□□□□ 0.22
PCDH1-203ENST00000394536 RNASEH1O60930 286 aaKnown RBP16.42■□□□□ 0.22
PCDH1-203ENST00000394536 APOA4P06727 396 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 CNPY1Q3B7I2 92 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 FUT11Q495W5 492 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 OLFML1Q6UWY5 402 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 ZBTB46Q86UZ6 589 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 TMEM174Q8WUU8 243 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 DCUN1D5Q9BTE7 237 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 GPAMQ9HCL2 828 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 CACNG4Q9UBN1 327 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 UBDO15205 165 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 BUD23O43709 281 aaKnown RBP16.42■□□□□ 0.22
PCDH1-203ENST00000394536 B3GAT3O94766 335 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 VAV1P15498 845 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 PITX1P78337 314 aaPredicted RBP16.42■□□□□ 0.22
PCDH1-203ENST00000394536 OTOP3Q7RTS5 596 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 DCUN1D1Q96GG9 259 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 GORASP1Q9BQQ3 440 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 CYLDQ9NQC7 956 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 MYH9P35579 1960 aaKnown RBP16.42■□□□□ 0.22
PCDH1-203ENST00000394536 DHRS4L1P0CG22 281 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 CCNG1P51959 295 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 GRM3Q14832 879 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 MAPRE2Q15555 327 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 FASTKD5Q7L8L6 764 aaKnown RBP16.42■□□□□ 0.22
PCDH1-203ENST00000394536 ERO1BQ86YB8 467 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 TP53INP2Q8IXH6 220 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 B3GALNT2Q8NCR0 500 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 CDHR5Q9HBB8 845 aa16.42■□□□□ 0.22
PCDH1-203ENST00000394536 DMAP1Q9NPF5 467 aaPredicted RBP16.42■□□□□ 0.22
PCDH1-203ENST00000394536 MTSS1O43312 755 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 ATG7O95352 703 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 LTFP02788 710 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 IQCF3P0C7M6 154 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 CCDC142Q17RM4 750 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 LSM12Q3MHD2 195 aaKnown RBP16.41■□□□□ 0.22
PCDH1-203ENST00000394536 CDCA2Q69YH5 1023 aaPredicted RBP16.41■□□□□ 0.22
PCDH1-203ENST00000394536 CTU1Q7Z7A3 348 aaKnown RBP16.41■□□□□ 0.22
PCDH1-203ENST00000394536 ANKRD13AQ8IZ07 590 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 SPATA22Q8NHS9 363 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 POMKQ9H5K3 350 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 EML4Q9HC35 981 aaKnown RBP16.41■□□□□ 0.22
PCDH1-203ENST00000394536 CASTOR2A6NHX0 329 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 TRPC5OSA6NMA1 111 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 GNGT2O14610 69 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 IL10P22301 178 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 SLC26A9Q7LBE3 791 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 GPRC5AQ8NFJ5 357 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 THAP11Q96EK4 314 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 SPON2Q9BUD6 331 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 WARS2Q9UGM6 360 aaKnown RBP16.41■□□□□ 0.22
PCDH1-203ENST00000394536 CCDC189A1A4V9 331 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 SRP72O76094 671 aaKnown RBP16.41■□□□□ 0.22
PCDH1-203ENST00000394536 OR6B1O95007 311 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 GRIK1P39086 918 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 RALGDSQ12967 914 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 SEMA5AQ13591 1074 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 FASTKQ14296 549 aaKnown RBP16.41■□□□□ 0.22
PCDH1-203ENST00000394536 ZNF618Q5T7W0 954 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 SYPL2Q5VXT5 272 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 MBLAC2Q68D91 279 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 TFAP2DQ7Z6R9 452 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 CCDC138Q96M89 665 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 DHRS4Q9BTZ2 278 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 ING2Q9H160 280 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 TLE6Q9H808 572 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 SP110Q9HB58 689 aa16.41■□□□□ 0.22
PCDH1-203ENST00000394536 CITO14578 2027 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 BTAF1O14981 1849 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 NHSL1Q5SYE7 1610 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 A0A088AWK7 358 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 MYOCOSA0A1B0GUC4 107 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 FAM95CA0A1B0GW59 222 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 NR5A2O00482 541 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 TNFAIP8O95379 198 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 ATP5BP06576 529 aaKnown RBP16.4■□□□□ 0.22
PCDH1-203ENST00000394536 FGF3P11487 239 aaPredicted RBP16.4■□□□□ 0.22
PCDH1-203ENST00000394536 PTPN1P18031 435 aaKnown RBP16.4■□□□□ 0.22
PCDH1-203ENST00000394536 ITGAXP20702 1163 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 SLC25A52Q3SY17 297 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 NCBP2-AS2Q69YL0 99 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 TUBGCP3Q96CW5 907 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 HSFY1Q96LI6 401 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 CCDC106Q9BWC9 280 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 MRPL40Q9NQ50 206 aaKnown RBP16.4■□□□□ 0.22
PCDH1-203ENST00000394536 NDUFA13Q9P0J0 144 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 PSMD13Q9UNM6 376 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 GNEQ9Y223 722 aaKnown RBP16.4■□□□□ 0.22
PCDH1-203ENST00000394536 RAP2CQ9Y3L5 183 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 TSPAN1O60635 241 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 PCLAFQ15004 111 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms