RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 LMAN2LQ9H0V9 348 aa18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 ZNF334Q9HCZ1 680 aaPredicted RBP18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 DNAJC17Q9NVM6 304 aaKnown RBP18.6■□□□□ 0.57
CCDC88C-203ENST00000389856 OBSL1O75147 1896 aa18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 EXOC1LA0A1B0GW35 172 aa18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 C2orf78A6NCI8 922 aa18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 KCNK1O00180 336 aa18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 CLDN11O75508 207 aa18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 BRAFP15056 766 aa18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 PTPN2P17706 415 aa18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 CDH4P55283 916 aa18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 SMAD3P84022 425 aaKnown RBP18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 BBS9Q3SYG4 887 aa18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 TTC31Q49AM3 519 aaPredicted RBP18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 RNF187Q5TA31 235 aaPredicted RBP18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 CHST9Q7L1S5 443 aa18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 TMEM150AQ86TG1 271 aa18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 PALM2Q8IXS6 379 aa18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 MAML1Q92585 1016 aa18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 C9orf72Q96LT7 481 aa18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 GBA3Q9H227 469 aa18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 ATXN3LQ9H3M9 355 aa18.59■□□□□ 0.57
CCDC88C-203ENST00000389856 H3BNC9 293 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 GRM6O15303 877 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 CKMP06732 381 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 POU2F2P09086 479 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 GSTA2P09210 222 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 CCNB1P14635 433 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 OR1E1P30953 314 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 ETFBP38117 255 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 RENBPP51606 427 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 NRLP54845 237 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 SLC7A9P82251 487 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 POLD3Q15054 466 aaPredicted RBP18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 RAB30Q15771 203 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 C9orf50Q5SZB4 431 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 NADSYN1Q6IA69 706 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 TFAP2DQ7Z6R9 452 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 TMC8Q8IU68 726 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 MICALL1Q8N3F8 863 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 CKAP2Q8WWK9 683 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 IGSF8Q969P0 613 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 TEKT5Q96M29 485 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 SP110Q9HB58 689 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 SSU72Q9NP77 194 aaKnown RBP18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 MAN1C1Q9NR34 630 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 IPO11Q9UI26 975 aaKnown RBP18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 MSRAQ9UJ68 235 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 STOML2Q9UJZ1 356 aa18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 SMG5Q9UPR3 1016 aaKnown RBP18.58■□□□□ 0.56
CCDC88C-203ENST00000389856 RASA4BC9J798 803 aa18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 RASA4O43374 803 aa18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 MYL4P12829 197 aa18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 DNAJB1P25685 340 aa18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 PAPOLAP51003 745 aaKnown RBP18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 ACTN3Q08043 901 aaPredicted RBP18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 SHHQ15465 462 aa18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 FAXCQ5TGI0 409 aa18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 ZNF354CQ86Y25 554 aa18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 LRRC34Q8IZ02 419 aa18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 LRRN4Q8WUT4 740 aa18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 PWWP2AQ96N64 755 aa18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 CORO1BQ9BR76 489 aa18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 RNF38Q9H0F5 515 aa18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 MAGEH1Q9H213 219 aa18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 VPS37BQ9H9H4 285 aa18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 ZDHHC7Q9NXF8 308 aa18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 AAR2Q9Y312 384 aaKnown RBP18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 SHROOM3Q8TF72 1996 aa18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 DENND4CQ5VZ89 1909 aa18.57■□□□□ 0.56
CCDC88C-203ENST00000389856 TCRBV7S3A2A0A539 114 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 CCL16O15467 120 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 PRPF4O43172 522 aaKnown RBP eCLIP18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 MAFKO60675 156 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 CLASP2O75122 1294 aaKnown RBP18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 ANXA9O76027 345 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 JCHAINP01591 159 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 VIMP08670 466 aaKnown RBP18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 IRF1P10914 325 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 PSMB4P28070 264 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 LIG3P49916 1009 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 EPHA5P54756 1037 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 HNRNPDQ14103 355 aaKnown RBP18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 ALFQ53S48 1182 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 FAM133BQ5BKY9 247 aaKnown RBP18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 CCNJLQ8IV13 435 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 TP53INP2Q8IXH6 220 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 GRAMD1AQ96CP6 724 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 MAGEB18Q96M61 343 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 NAT9Q9BTE0 207 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 LRRC3Q9BY71 257 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 KCNK9Q9NPC2 374 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 AGO1Q9UL18 857 aaKnown RBP18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 SH3BP1Q9Y3L3 701 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 CPQQ9Y646 472 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 NUP205Q92621 2012 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 GBF1Q92538 1859 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 A0A1B0GVM2 712 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms