RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 SLC11A2P49281 568 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF445P59923 1031 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 TSPAN5P62079 268 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 LAMB3Q13751 1172 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 PUM1Q14671 1186 aaKnown RBP eCLIP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF718Q3SXZ3 478 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 RBM23Q86U06 439 aaKnown RBP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ALLCQ8N6M5 410 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 NINJ1Q92982 152 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ECHDC3Q96DC8 303 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 BSCL2Q96G97 398 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 CGRRF1Q99675 332 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 SSX3Q99909 188 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 SGIP1Q9BQI5 828 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 RUSC1Q9BVN2 902 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 KCTD10Q9H3F6 313 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 MARCOQ9UEW3 520 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 GNEQ9Y223 722 aaKnown RBP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 PCDHGB7Q9Y5F8 929 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ZMYM3Q14202 1370 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 CRYZL1O95825 349 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 POU2F2P09086 479 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 STAT3P40763 770 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 SCTRP47872 440 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 CDH6P55285 790 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 IL5RAQ01344 420 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 SPIRE1Q08AE8 756 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 NIPAL4Q0D2K0 466 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 GRHL2Q6ISB3 625 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 UNC13DQ70J99 1090 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 CYP2U1Q7Z449 544 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 NET1Q7Z628 596 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 TUSC5Q8IXB3 177 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 FLAD1Q8NFF5 587 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 TBC1D15Q8TC07 691 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 CNOT9Q92600 299 aaKnown RBP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 TLR8Q9NR97 1041 aaKnown RBP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ZMYM5Q9UJ78 669 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 A6NCN8 305 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 TSTD3H0UI37 97 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 B4GAT1O43505 415 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 NOL4O94818 638 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ZCCHC18P0CG32 403 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 COL6A1P12109 1028 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 EPORP19235 508 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 FMO3P31513 532 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ENTPD1P49961 510 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 PTGES3Q15185 160 aaKnown RBP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 SLC14A2Q15849 920 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 TMEM35AQ53FP2 167 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 SULT1C3Q6IMI6 304 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF677Q86XU0 584 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 L3MBTL4Q8NA19 623 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 PROX1Q92786 737 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 REPS1Q96D71 796 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 C8orf48Q96LL4 319 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 EIF2AK1Q9BQI3 630 aaKnown RBP4.71□□□□□ -1.66
SCN1A-202ENST00000375405 OPA3Q9H6K4 179 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 FAM105AQ9NUU6 356 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 ADAM22Q9P0K1 906 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 VPS28Q9UK41 221 aa4.71□□□□□ -1.66
SCN1A-202ENST00000375405 APC2O95996 2303 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 PP2D1A8MPX8 630 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 KLRF2D3W0D1 207 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 ANKRD28O15084 1053 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 ITM2AO43736 263 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 OAZ2O95190 189 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 GNRH1P01148 92 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 TCF4P15884 667 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 DYRK1AQ13627 763 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 SSX2Q16385 188 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 MPPE1Q53F39 396 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 KLHL22Q53GT1 634 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 PYDC2Q56P42 97 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 TMEM214Q6NUQ4 689 aaKnown RBP4.7□□□□□ -1.66
SCN1A-202ENST00000375405 OAFQ86UD1 273 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 CBWD2Q8IUF1 395 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 RHOT2Q8IXI1 618 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 USP13Q92995 863 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF578Q96N58 590 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-202ENST00000375405 FUT8Q9BYC5 575 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 POLR1EQ9GZS1 481 aaKnown RBP4.7□□□□□ -1.66
SCN1A-202ENST00000375405 ELOVL6Q9H5J4 265 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 NOL6Q9H6R4 1146 aaKnown RBP4.7□□□□□ -1.66
SCN1A-202ENST00000375405 CATSPERBQ9H7T0 1116 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 HPF1Q9NWY4 346 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 MTMR10Q9NXD2 777 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF224Q9NZL3 707 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 UPB1Q9UBR1 384 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 SLC9A2Q9UBY0 812 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 TCP11X1B4DZS4 312 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 RIPK2O43353 540 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 ASNA1O43681 348 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 PALMO75781 387 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 CSN2P05814 226 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 MMP8P22894 467 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 CRKP46108 304 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 NDUFA6P56556 154 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 KCNQ4P56696 695 aa4.7□□□□□ -1.66
SCN1A-202ENST00000375405 HNRNPKP61978 463 aaKnown RBP eCLIP4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms